M.
Rowińska-Żyrek
Faculty of Chemistry, University of Wroclaw, F. Joliot-Curie 14, 50383 Wroclaw, Poland. E-mail: magdalena.rowinska-zyrek@chem.uni.wroc.pl
First published on 5th April 2016
Amylin, a small peptide co-secreted from pancreatic β-cells together with insulin, is one of the hallmarks of type II diabetes. In the course of this disease, it misfolds into small oligomers or into an aggregated β-sheet amyloid fiber. The misfolding mechanism is not yet well understood, but it is clear that metal ions such as zinc and copper play an important role in the process. In this work, the coordination chemistry of Zn2+ and Cu2+ with the membrane-disrupting part of amylin (amylin1–19) is discussed. Cu2+ alters the structure of amylin1–19 only locally, by binding to His18 imidazole and to three preceding amides at the N-terminal side of this residue. Zn2+ binds to the imidazole of His18 and the amine group of Lys1, imposing a kink in the peptide between these residues. This zinc-induced kink might be a partial explanation of the formation of prefibrillar oligomeric aggregates of amylin, which are much more toxic to β-cells than large fibrillar deposits.
In the beginning of the initial debate, the prevailing opinion suggested that the excess of metal ions is the trigger for misfolding, and often, chelation therapy was even suggested.10 The process was later found to be much more complicated, involving not only metal coordination and disruption of metal homeostasis, but also various other factors, such as the interaction of hydrophobic regions or interactions with membranes that are also factors which trigger the formation of the thermodynamically unfavored nucleus, by which fiber formation is triggered.11
There are numerous parallels between amyloidogenic proteins involved in neurodegenerative diseases and a small polypeptide involved in glucose regulation – amylin, also known as the islet amyloid polypeptide (IAPP). Amylin is a 37 residue peptide, which is co-secreted from pancreatic β-cells together with its synergistic partner, insulin, and stored in the secretory granules of the islets of Langerhans in pancreatic β-cells.12,13 Amylin takes part in glucose regulation and appetite suppression, preventing post-prandial spikes in blood glucose levels.14 It is also an amyloidogenic peptide that undergoes misfolding from a monomeric random coil conformation to an aggregated β-sheet amyloid fiber, found in the islet beta cells of over 95% of the patients with type II diabetes (T2D)15,16 – a common, chronic, degenerative metabolic disease characterized by elevated blood glucose levels, abnormal insulin secretion and insulin resistance, which affects over 300 million people worldwide.17 The misfolding and amyloid fibril formation of amylin result in the death of islet beta cells and are thought to be important in the pathogenesis of T2D.18 The aggregation of small amylin oligomers results in oxidative stress and in the disruption of cell membranes.19–21 An increasing amount of evidence shows that most toxic species are not mature amyloid fibrils, but small oligomers, which most likely cause membrane disruption (another parallel to the proteins involved in neurodegeneration).22–24
The native form of amylin is amidated at the C-terminus and has a disulfide bridge between Cys2 and Cys7. The hormone peptide comprises three regions: (i) the membrane disrupting fibrillogenic N-terminus (residues 1–19, the fragment studied in this work), which influences the overall kinetics of fibril formation, (ii) the amyloidogenic region (residues 20–29), and the C-terminal part (residues 30–37), which enhances amyloid formation (Fig. 1).
Fig. 1 A comparison of the native sequence of human and rat amylin. Sequential differences are marked in green. Histidine 18 is the potential metal binding site. |
One of the differences between the human and the rat form of the peptide is the H18R substitution (Fig. 1), which results in the change of cytotoxicity on β-cells: the human form can become highly cytotoxic, while the non-aggregating rat amylin has negligible influence on β-cell survival.25,26 It might also be worth to point out that the N-terminal (1–19) region of the human amylin is toxic like the full-length peptide, but the respective sequence of the rat amylin is not (Fig. 1).27,28
It is clear that amylin is very prone to aggregation.29 Why doesn't this process occur in vivo, in the granules where it is stored in very high millimolar concentrations? There are several compounds in the granule that prevent amylin from fibrilising under these conditions: (i) the relatively low pH of the granule (pH = 6.0), (ii) the high concentration of zinc (∼14 mM) and (iii) the high concentration of insulin (∼4 times more than amylin).
The increasing number of diabetic patients causes an elevated amount of attention drawn towards understanding the molecular basis of the disease. As a result of this, numerous recent studies prove that the presence of Zn2+ and Cu2+ can inhibit the aggregation of amylin, although the underlying mechanism is far from being understood.29,30 Zinc is of particular interest, since its concentration in pancreatic β-cells is one of the highest in the body, and since zinc deficiency is quite a common symptom of type II diabetes.31 What is already clear is the fact that the presence of zinc inhibits the membrane disruption ability of amylin and reduces the amount of formed amyloids, but it does not alter the morphology of the fibers. It is interesting that zinc has a dual effect on fibrillogenesis of amylin: it increases the lag-time for fibre formation and increases the rate of addition of amylin to existing fibres at high concentrations, while having the opposite effect at lower concentrations.
Some studies show that also copper(II) levels are significantly elevated in diabetic patients,32,33 which suggests a correlation between copper homeostasis and the molecular basis of type 2 diabetes. A local disruption of copper homeostasis triggers the formation of oxidative species, stimulating the production of H2O2 with amylin34 (another parallel to amyloid beta).35 Several studies correlated the ability of copper(II) to inhibit amylin fibrillation with toxicity,36,37 and confirmed the non-fibrillogenic nature of the copper(II)–amylin aggregates.38
This metal has also been found to mediate the membrane-interactions of the 17–29 fragment of amylin.39
Recently, the 15–22 fragment was studied by using different spectroscopy techniques, showing that Cu2+ anchors to His18 and, which is quite unusual, binds to the subsequent amide groups toward the C-terminus, forming a thermodynamically unfavorable seven-membered chelate ring with an equatorial {3N,O} coordination mode at physiological pH.40 Copper binding to a monomeric IAPP was expected to compete with conformation changes needed to form β-sheet structures, and thus delay fibril formation.
The interactions of Cu2+ with the rat fragments of amylin were also extensively studied, showing the formation of a square planar complex, in which copper(II) is bound to four amide nitrogens.41
Knowing the importance of the impact of copper and zinc on the aggregation and membrane disrupting abilities of amylin, this work tries to understand the interactions between Cu2+ and Zn2+ with the membrane disrupting fragment of human amylin, KNTATATQRLANFLVHS-NH2 (amylin1–19), focusing on the thermodynamics of such complex formation and precisely pointing out metal binding sites. The work provides a detailed understanding of the coordination chemistry of amylin–metal interactions and gives insight into bioinorganic chemistry of type 2 diabetes.
HYPERQUAD 2006 and SUPERQUAD programs were used for stability constant calculations.43,44 Standard deviations were computed by HYPERQUAD 2006 and refer to random errors only. The constants for hydrolytic Zn2+ species were used in these calculations.45 The speciation and competition diagrams were computed with the HYSS program.46
The UV-Vis and CD spectroscopy parameters were calculated from the spectra obtained at the pH values corresponding to the maximum concentration of each particular species, on the basis of potentiometric studies.
The KNTATATQRLANFLVHS-NH2 peptide (amylin1–19) behaves as an LH3 acid, with the deprotonating groups corresponding to the histidine imidazole, the N-terminal amine group and the lysine side chain group, with pKa values of 6.04, 7.91 and 10.83, respectively. The cysteine groups are bridged with a disulfide bond, as in the wild type form of amylin, and the C-terminal serine is amidated, in order to be a better mimic of the full-length amylin.
Amylin1–19 shows an NMR behavior typical of a disordered peptide. NMR spectra recorded at different pH values and temperatures did not suggest any specific rearrangements of the apo peptide.
Mass spectrometry proves that amylin1–19 forms only mononuclear complexes with both copper and zinc ions. ESI-MS peak assignments were based on the comparison between the precise calculated and experimental m/z values and their isotopic patterns. The prevailing signals correspond to the free ligand (m/z = 1038.6, z = 2+) and to the chloride adducts of equimolar complexes with Cu2+ (m/z = 1088.5, z = 2+) and with Zn2+ (m/z = 1089.1, z = 2+) (Fig. S1†). The signals are most abundant under all the studied pH conditions (pH 5, 7.4 and 9), and also when 1:2, 1:1 and 2:1 metal to ligand ratios are analyzed. Other minor signals correspond to various chloride and sodium adducts of the free ligand and of their metal complexes.
There are major differences in the coordination mode of amylin copper and zinc complexes. The only parallel for both metals is the first anchoring site – the His18 imidazole; the remaining coordinating groups are different for the two metals.
In the case of copper species, the first complex observed at low pH, CuH2L, involves only His18 in binding – this is clearly visible in the NMR spectra (Fig. 2A), whereafter the addition of 0.3 Cu2+ equivalents, only the aromatic imidazole protons are broadened (since copper is a paramagnetic metal ion, a reasonably small amount of this metal causes selective broadening of the residues involved in binding). The coordination mode is further confirmed by a d–d band at 655 nm in UV-Vis spectroscopy, and by the lack of pronounced circular dichroism signals (Table 1, Fig. S2 and S3†). However, the possible co-existence of minor CuHL species cannot be unequivocally excluded.
Species | logβ | pKa | UV-Vis | CD | ||
---|---|---|---|---|---|---|
λ/nm | ε/M−1 cm−1 | λ/nm | Δε/M−1 cm−1 | |||
HL | 10.83 | 10.83 (Lys) | ||||
H2L | 18.74 | 7.91 (N-t) | ||||
H3L | 24.78 | 6.04 (His) | ||||
Cu2+ complexes | ||||||
CuH2L | 24.92 (2) | 655 | 36 | 279 | −0.09 | |
317 | −0.06 | |||||
690 | −0.11 | |||||
CuL | 14.19 (2) | 5.39 (amide) | 560 | 123 | 288 | −27.3 |
319 | 6.74 | |||||
495 | 2.72 | |||||
635 | 11.56 | |||||
CuH−1L | 8.80 (3) | 8.11 (N-t) | 545 | 145 | 292 | −18.90 |
316 | 8.22 | |||||
503 | 8.06 | |||||
595 | −17.75 | |||||
CuH−2L | 0.69 (4) | 9.74 (Lys) | 540 | 158 | 295 | −9.50 |
316 | 17.58 | |||||
495 | 6.13 | |||||
570 | −18.49 | |||||
CuH−3L | −9.05 (5) | 535 | 154 | 292 | −11.05 | |
316 | 19.45 | |||||
560 | −19.21 | |||||
Zn2+ complexes | ||||||
ZnH2L | 21.33 (2) | 6.27 (N-t) | ||||
ZnHL | 15.06 (2) | 8.07 (H2O) | ||||
ZnL | 6.99 (4) | 8.22 (H2O) | ||||
ZnH−1L | −1.23 (4) | 9.84 (Lys) | ||||
ZnH−2L | −11.07 (7) |
Above pH 5, drastic changes can be observed in all spectroscopy methods. The UV-Vis band undergoes a blue shift to 560 nm, and the CD spectra are typical of a {Nim,2N−} coordination (Table 1, Fig. S2 and S3†). Also, selective broadening on NH gamma and NH beta of Val17 observed on the NMR spectra strongly supports the involvement of amide nitrogens in binding (Fig. 2B).
Above pH 6, the CuL complex deprotonates to CuH−1L, with a pKa of 5.39 (Fig. 3A). The strong blue shift and increase in intensity in the CD (from 635 to 595 nm, Table 1 and Fig. S3†) and UV-Vis spectra (from 560 to 545 nm, Table 1 and Fig. S2†) confirm the involvement of a third amide in the coordination, resulting in {Nim, 3N−} binding mode. This mode does not change with the further increase of pH; pKa constants of 8.11 and 9.74 correspond to the deprotonation of the N-terminal amine and of the side chain of lysine, respectively; both the groups do not participate in binding (Table 1).
Fig. 3 Distribution diagrams for the formation of (A) Cu2+ and (B) Zn2+ complexes with amylin1–19 at 25 °C and I = 0.1 M. [M2+] = 0.5 × 10−3 M; M/L molar ratio = 1:1. |
The coordination of Zn2+ to amylin1–19 differs significantly when compared to that of Cu2+; for ZnH2L, the anchoring site is the histidine imidazole, just as it was in the first complex observed for copper at low pH. However, in the species observed at a physiological pH (with a maximum at pH 7.2), ZnHL, the imidazole nitrogen and the N-terminal amino group are the residues which are directly involved in coordination; the vacant zinc binding sites are occupied by water molecules. The pKa value of 6.27 strongly suggests the involvement of this group in binding (the corresponding pKa for the free ligand = 7.91, Table 1). NMR spectroscopy confirms the {Nim,NH2} binding mode. The addition of Zn2+ to amylin1–19 causes selective line broadening of His18 Hα–Hβ correlation and a broadening and shift of the N-terminal Lys1 Hα–Hβ, Hα–Hδ and Hα–Hγ NMR signals (Fig. 2C). The terminal amine protons are not visible in either the metal bound or the apo form of the peptide, most probably due to a fast water exchange.
The ZnHL complex dominates in solutions up to pH 8. At higher pH, two stepwise deprotonations with the corresponding pKa values of 8.07 and 8.22 occur (Fig. 3B and Table 1). Most likely, those two protons arise from two water molecules, present in the two vacant coordination sites not occupied by peptide residues. This scenario is very likely, since Zn2+ is not able to deprotonate amide nitrogens, in contrast to Cu2+. Another scenario could include the carbonyl oxygen of His18 or Lys1 having a stabilization role in the coordination of Zn2+.
The binding mode does not change with the increase of pH; the ZnH−2L complex results from the deprotonation of the unbound lysine residue (with a pKa value of 9.84).
It becomes obvious that His18 is crucial for the coordination of both copper and zinc to amylin1–19. This was expected, since it was already shown in previous studies that the binding of zinc to amylin causes a local disruption of the secondary structure in the vicinity of His-18.47 Biological studies showed that the substitution of this residue to arginine severely reduces the membrane disrupting ability of the 1–19 fragment.48 The situation becomes very similar after the addition of Zn2+ to the full length amylin–membrane disruption also becomes far less pronounced. Both the H to R substitution and zinc binding change the overall charge distribution of the peptides – most likely, such peptides would be more surface associated, since the positive His-18 imidazole would make it impossible for them to penetrate into the hydrophobic core of a lipid bilayer. Also, zinc may create an energetic barrier for the formation of amyloids by promoting the formation of prefibrillar aggregates and thus inhibiting the formation of amyloid fibrils.49,50 It is worth keeping in mind that (just as it was in the case of amyloid β) mature amyloid fibers show relatively little toxicity to β-cells, and most likely the small, prefibrillar aggregates are the toxic species.23
It is tempting to suggest that the zinc–amylin binding mode described in this work might be at least a partial explanation of how these prefibrillar aggregates are formed – the coordination mode which involved the imidazole of His18 and the amine group of Lys1 imposes a kink between those residues (Fig. 4). This special structure might be the thermodynamical basis of prefibrillar aggregate formation. Zinc is bound to His18 and Lys1 at a physiological pH (ZnHL species, in our case, with a maximum abundance at pH 7.2). Literature data show that at a similar pH, the presence of low concentrations of Zn2+ in the incubation solution decreases the rate of amylin amyloid formation, whereas a higher zinc concentration has an opposite effect.48
Fig. 4 Suggested binding modes of Cu2+ and Zn2+ complexes at pH 7.2. Explicit hydrogens are omitted for clarity. |
Again, it can be hypothesised that in excess of zinc, more than one Zn2+ ion can be bound to the peptide (e.g. one to His18 and another to the N-terminal amine of Lys1) – in this case, the special kink observed in the case of mononuclear species would no longer be present.
Copper, on the other hand, alters the structure of amylin1–19 only locally, by binding to His18 imidazole and to three preceding amides at the N-terminal side of this residue (Fig. 4). It is quite a common binding mode for Cu2+, and in the case of amylin1–19 (CuH−1L), it already starts to prevail in solution at pH 6. This coordination mode is different from the one reported by Rivillas-Acevedo et al.;40 here copper deprotonated amides from the 15–24 amylin fragment are towards the C-terminus of the peptide. Clearly, the membrane disrupting amylin1–19 region has only one amide that can be deprotonated by Cu(II), once it is bound to His18 and the data cannot be directly compared to that from Rivillas-Acevedo's work. The binding mode of the highly prone to aggregation full length amylin requires more studies, e.g. on the non-aggregating analogue – pramlintide.
Biological studies emphasize the role of copper-dependent generation of H2O2, which was found to directly contribute to the toxicity of human amylin.51,52 Again, a similar scenario was observed in the case of β-amyloid-copper or prion-copper complexes.7,53 Does similar coordination chemistry result in a similar biological outcome? Most probably, numerous biological studies and a detailed kinetical description of the amyloid aggregation in the presence of metal ions are necessary, before the answer to this question becomes something more than a very far-reaching hypothesis about the protective role of copper–amylin complex in vivo.
This work summarizes the details of Zn2+ and Cu2+ coordination to the membrane-disrupting fragment of amylin and amylin1–19. The anchoring site for Cu2+ is His18, and at physiological pH, the histidine imidazole and three amides are in the first coordination sphere. Such a typical, square-planar copper complex might contribute to the generation of H2O2, which is one of the factors responsible for the toxicity of human amylin. From the point of view of bioinorganic chemistry, the binding mode of Zn2+ to amylin1–19 seems to be much more interesting – at physiological pH, it is bound to His18 imidazole and to the N-terminal amine group of Lys1. This type of binding induces a kink in the peptide backbone, which might be the first step of prefibrillar aggregate formation.
This work gives us very precise details about the coordination of copper and zinc to the membrane disrupting fragment of amylin, but in the end, it brings up even more questions that still need to be answered: does the binding of zinc and copper indeed have an influence on the pathogenesis of amylin? How does it influence the aggregation of the full-length amylin? And, above all – are the metal-bound aggregates the cause, or rather the consequence of T2D?
Footnote |
† Electronic supplementary information (ESI) available. See DOI: 10.1039/c6dt00628k |
This journal is © The Royal Society of Chemistry 2016 |