Issue 24, 2023

Correlation of temperature dependence of hydride kinetic isotope effects with donor–acceptor distances in two solvents of different polarities

Abstract

Recently observed nearly temperature (T)-independent kinetic isotope effects (KIEs) in wild-type enzymes and T-dependent KIEs in variants were used to suggest that H-tunneling in enzymes is assisted by the fast protein vibrations that help sample short donor–acceptor distances (DADs). This supports the recently proposed role of protein vibrations in DAD sampling catalysis. However, use of T-dependence of KIEs to suggest DAD sampling associated with protein vibrations is debated. We have formulated a hypothesis regarding the correlation and designed experiments in solution to investigate it. The hypothesis is, a more rigid system with shorter DADTRS's at the tunneling ready states (TRSs) gives rise to a weaker T-dependence of KIEs, i.e., a smaller ΔEa (= EaDEaH). In a former work, the solvent effects of acetonitrile versus chloroform on the ΔEa of NADH/NAD+ model reactions were determined, and the DADPRC's of the productive reactant complexes (PRCs) were computed to substitute the DADTRS for the DADTRS–ΔEa correlation study. A smaller ΔEa was found in the more polar acetonitrile where the positively charged PRC is better solvated and has a shorter DADPRC, indirectly supporting the hypothesis. In this work, the TRS structures of different DADTRS's for the hydride tunneling reaction from 1,3-dimethyl-2-phenylimidazoline to 10-methylacridinium were computed. The N-CH3/CD3 secondary KIEs on both reactants were calculated and fitted to the observed values to find the DADTRS order in both solutions. It was found that the equilibrium DADTRS is shorter in acetonitrile than in chloroform. Results directly support the DADTRS–ΔEa correlation hypothesis as well as the explanation that links T-dependence of KIEs to DAD sampling catalysis in enzymes.

Graphical abstract: Correlation of temperature dependence of hydride kinetic isotope effects with donor–acceptor distances in two solvents of different polarities

Supplementary files

Article information

Article type
Paper
Submitted
08 May 2023
Accepted
30 May 2023
First published
06 Jun 2023

Org. Biomol. Chem., 2023,21, 5090-5097

Correlation of temperature dependence of hydride kinetic isotope effects with donor–acceptor distances in two solvents of different polarities

M. Bai, R. Pratap, S. Salarvand and Y. Lu, Org. Biomol. Chem., 2023, 21, 5090 DOI: 10.1039/D3OB00718A

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