Issue 47, 2016

Estimating the energy of intramolecular hydrogen bonds from 1H NMR and QTAIM calculations

Abstract

The values of the downfield chemical shift of the bridge hydrogen atom were estimated for a series of compounds containing an intramolecular hydrogen bond O–H⋯O, O–H⋯N, O–H⋯Hal, N–H⋯O, N–H⋯N, C–H⋯O, C–H⋯N and C–H⋯Hal. Based on these values, the empirical estimation of the hydrogen bond energy was obtained by using known relationships. For the compounds containing an intramolecular hydrogen bond, the DFT B3LYP/6-311++G(d,p) method was used both for geometry optimization and for QTAIM calculations of the topological parameters (electron density ρBCP and the density of potential energy V in the critical point of the hydrogen bond). The calculated geometric and topological parameters of hydrogen bonds were also used to evaluate the energy of the hydrogen bond based on the equations from the literature. Comparison of calibrating energies from the 1H NMR data with the energies predicted by calculations showed that the most reliable are the linear dependence on the topological ρBCP and V parameters. However, the correct prediction of the hydrogen bond energy is determined by proper fitting of the linear regression coefficients. To obtain them, new linear relationships were found between the calculated ρBCP and V parameters and the hydrogen bond energies obtained from empirical 1H NMR data. These relationships allow the comparison of the energies of different types of hydrogen bonds for various molecules and biological ensembles.

Graphical abstract: Estimating the energy of intramolecular hydrogen bonds from 1H NMR and QTAIM calculations

Supplementary files

Article information

Article type
Paper
Submitted
27 Jul 2016
Accepted
03 Nov 2016
First published
03 Nov 2016

Org. Biomol. Chem., 2016,14, 11199-11211

Estimating the energy of intramolecular hydrogen bonds from 1H NMR and QTAIM calculations

A. V. Afonin, A. V. Vashchenko and M. V. Sigalov, Org. Biomol. Chem., 2016, 14, 11199 DOI: 10.1039/C6OB01604A

To request permission to reproduce material from this article, please go to the Copyright Clearance Center request page.

If you are an author contributing to an RSC publication, you do not need to request permission provided correct acknowledgement is given.

If you are the author of this article, you do not need to request permission to reproduce figures and diagrams provided correct acknowledgement is given. If you want to reproduce the whole article in a third-party publication (excluding your thesis/dissertation for which permission is not required) please go to the Copyright Clearance Center request page.

Read more about how to correctly acknowledge RSC content.

Social activity

Spotlight

Advertisements