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UV-induced long-lived decays in solvated pyrimidine nucleosides resolved at the MS-CASPT2/MM level

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Abstract

The most relevant ‘dark’ electronic excited states in DNA/RNA pyrimidine nucleosides are mapped in water employing hybrid MS-CASPT2/MM optimisations with explicit solvation and including the sugar. Conical intersections (CIs) between initially accessed bright 1ππ* and the lowest energy dark 1nπ* excited states, involving the lone pair localised on the oxygen and/or nitrogen atoms are characterised. They are found in the vicinities of the Franck–Condon (FC) region and are shown to facilitate non-adiabatic population transfer. The excited state population of the 1nOπ* state, localised in the carbonyl moiety on all pyrimidine nucleosides, is predicted to rapidly evolve to its minimum, displaying non-negligible potential energy barriers along its non-radiative decay, and accounting for the ps signal registered in pump–probe experiments as well as for an efficient population of the triplet state. Cytidine displays an additional 1nNπ* state localised in the N3 atom and that leads to its excited state minimum displaying large potential energy barriers in the pathway connecting to the CI with the ground state. Sugar-to-base hydrogen/proton transfer processes are assessed in solution for the first time, displaying a sizable barrier along its decay and thus being competitive with other slow decay channels in the ps and ns timescales. A unified deactivation scheme for the long-lived channels of pyrimidine nucleosides is delivered, where the 1nOπ* state is found to mediate the long-lived decay in the singlet manifold and act as the doorway for triplet population and thus accounting for the recorded phosphorescence and, more generally, for the transient/photoelectron spectral signals registered up to the ns timescale.

Graphical abstract: UV-induced long-lived decays in solvated pyrimidine nucleosides resolved at the MS-CASPT2/MM level

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Publication details

The article was received on 08 Dec 2017, accepted on 12 Feb 2018 and first published on 12 Feb 2018


Article type: Paper
DOI: 10.1039/C7CP08235E
Citation: Phys. Chem. Chem. Phys., 2018, Advance Article
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    UV-induced long-lived decays in solvated pyrimidine nucleosides resolved at the MS-CASPT2/MM level

    A. J. Pepino, J. Segarra-Martí, A. Nenov, I. Rivalta, R. Improta and M. Garavelli, Phys. Chem. Chem. Phys., 2018, Advance Article , DOI: 10.1039/C7CP08235E

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