David K.
Smith
Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK. E-mail: david.smith@york.ac.uk
First published on 26th April 2018
This feature article provides a personal insight into the research from my group over the past 10 years. In particular, the article explains how, inspired in 2005 by meeting my now-husband, Sam, who had cystic fibrosis, and who in 2011 went on to have a double lung transplant, I took an active decision to follow a more applied approach to some of our research, attempting to use fundamental supramolecular chemistry to address problems of medical interest. In particular, our strategy uses self-assembly to fabricate biologically-active nanosystems from simple low-molecular-weight building blocks. These systems can bind biological polyanions in highly competitive conditions, allowing us to approach applications in gene delivery and coagulation control. In the process, however, we have also developed new fundamental principles such as self-assembled multivalency (SAMul), temporary ‘on–off’ multivalency, and adaptive/shape-persistent multivalent binding. By targeting materials with applications in drug formulation and tissue engineering, we have discovered novel self-assembling low-molecular-weight hydrogelators based on the industrially-relevant dibenzylidenesorbitol framework and developed innovative approaches to spatially-resolved gels and functional multicomponent hybrid hydrogels. In this way, taking an application-led approach to research has also delivered significant academic value and conceptual advances. Furthermore, beginning to translate fundamental supramolecular chemistry into real-world applications, starts to demonstrate the power of this approach, and its potential to transform the world around us for the better.
Dave Smith is Professor of Chemistry at University of York, UK, publishing >150 research papers and with an h-index well over 50. He is a passionate educator with a strong belief in widening participation, giving outreach lectures to >50000 UK school students and developing his own YouTube chemistry channel, with >500000 views. Dave has received the RSC Corday Morgan Award and a National Teaching Fellowship from the Higher Education Academy. He was one of C&ENs Top 20 Chemists to Follow on Twitter (http://@professor_dave), one of the RSC's 175 diverse ‘Faces of Chemistry’ and was shortlisted for a ‘Gay Times’ Honour. Dave entered into a civil partnership with his husband Sam in 2010. They live in central York, with their adopted son – they enjoy the vibrant, historic city, and like cooking & travelling. |
Sam has cystic fibrosis – the genetic disease that encodes faults in chloride transport proteins within the cell membrane, which in turn causes mucus build-up around cells.2 This problem is particularly acute in the lungs, where the mucus hosts bacterial infections that ultimately lead to severe lung damage and early death. When I met Sam, my research team was pioneering an understanding of self-assembled gels in organic solvents3 and anion recognition events in non-aqueous media.4 I was, and indeed still am, very proud of this research, but explaining to someone with a life-limiting condition that you are using all of your skills to understand how peptides interact with one another in toluene somehow felt inadequate. I therefore became determined that some of our research would approach problems that might make a difference, specifically in CF-related medicine. In terms of supramolecular chemistry, this defines a clear challenge: for research to be medicinally or biologically relevant, you have to work in highly competitive media – for example water, and more likely serum, plasma, or even blood. This makes supramolecular nanomedicine highly challenging.5 We therefore speculated that by targeting medicinal applications, important new fundamental insights and guiding principles may also emerge.
We decided to develop an innovative biomimetic approach to DNA binding and delivery. Given the well-known ability of multivalent displays of ligands to enhance binding affinities,10 we designed multivalent arrays of bio-inspired DNA-binding ligands. An effective naturally-occurring DNA binder is spermine,11 present in sperm. This compound was first isolated in crystalline form from human semen by van Leeuwenhoek in the late 17th century,12 testimony to its very high concentrations in seminal fluid. Spermine is also present at micromolar levels in all eukaryotic cells. It has pKa values that are optimised for DNA binding, is present as a tetra-cation at physiological pH, and is an appropriate shape to bind within the minor groove of DNA. However, the binding of an individual spermine unit to DNA has relatively low affinity.13 For this reason, relatively large concentrations are required in vivo to achieve control over DNA.
We reasoned that displaying spermine ligands in a multivalent manner may enhance the binding affinity, and our initial design therefore simply displayed these ligands on the periphery of dendritic architectures (G1-SPM and G2-SPM, Fig. 1A).14 Nona-valent G2-SPM was a highly effective DNA binder, with binding affinities effectively independent of salt concentration (i.e., ionic strength). Conversely, the binding of trivalent G1-SPM to DNA was weaker, and was adversely affected by physiological salt concentrations. This intriguing phenomenon was challenging to fully rationalise. At around this time, I joined a highly productive COST network (TD0802) focussing on Dendrimers in Biomedicine.15 Indeed, EU networking has been a huge part of the last 12 years of research. As a part of this network, I met the irrepressibly energetic Prof. Sabrina Pricl from University of Trieste, who persuaded me multiscale modelling was a vital complement to our experimental work. This in silico approach can help understand binding mechanisms and design agents ab initio with greater activity. Sabrina has become a close collaborator and a great personal friend. In 2009, in a key paper, we proposed the underlying mechanism by which G2-SPM resists competitive salt ions at the binding interface – a ‘screening and sacrifice’ model.16 Not all of the nine spermine ligands actively bind to DNA and in high salt conditions, more of the ligands sacrificed their interactions, but then acted to screen the remaining binding sites, which achieved significantly enhanced affinity (Fig. 1B). We therefore demonstrated an important new advantage of having flexible multivalent arrays under these highly competitive binding conditions (Fig. 1C). Pleasingly, this demonstrated that wholly new fundamental insights can arise from work that starts out with a specific application in mind.
Given the strength of interactions between G2-SPM and DNA, we recognised that degradation of our DNA binders would be important if we were to achieve effective gene delivery. Our synthetic approach was therefore modified to change Newkome-type amide–ether dendritic scaffolds,17 into Fréchet–Hult type ester-derived dendrons (G1-Ester, G2-Ester and G3-Ester, Fig. 2, top).18 Fréchet–Hult dendrons had been reported to degrade under biologically-relevant conditions.19 Displaying our DNA binding ligands on the surface of such systems yielded dendrons that exhibited ‘on–off’ multivalency.20 This was a new concept, developed by us, in which the synthetic construct initially has ultra-high-affinity for its target owing to its multivalent structure, but after degradation, the multivalent array is destroyed, and all ability of the compound to intervene in biological pathways is lost. We reasoned this approach would assist with intracellular DNA release and limit the persistence and potential toxicity of our nanoscale delivery vehicles – a problem often associated with dendrimers and other nanosystems in vivo.21 We also developed dendrons in which a photo-cleavable linker was inserted between the dendron and the ligand display, so that UV irradiation led to triggered loss of the ligands from the surface of the dendron (Fig. 2, bottom) hence switching off the ultra-high affinity DNA binding event.22
In addition to tuning the framework of the dendron to introduce degradability, we also tuned the ligands on the surface (e.g.G1-SPM, G1-DAPMA, G1-DAP, Fig. 3).23 We found that naturally occurring SPM ligands were the most effective for DNA binding, but that less effective DAPMA ligands actually gave somewhat better gene delivery profiles. Molecular dynamics was insightful in understanding the thermodynamic impact of ligand modification. Although the enthalpic contribution to binding was roughly proportional to the dendron surface charge, dendrons with DAPMA surface amines had significant entropic costs of binding to DNA. This is a consequence of the fact that for this diamine more of the dendron structure has to be organised in order for multiple charges to make effective contact with DNA, while for SPM, each surface ligand is already an optimised triamine, giving each individual charge a lower entropic cost of binding. Furthermore, the hindered tertiary amine in DAPMA bound particularly strongly to the DNA double helix leading to ligand back-folding and geometric distortion of the DNA. Although this weakens binding, we suggested it might explain enhanced gene delivery, as DNA compaction and release are both important steps.
Initially, we simply modified the focal point of our existing dendrons with hydrophobic units (e.g.Chol-G1, Chol2-G1, and Chol-G2, Fig. 4).26 Pleasingly, converting a simple benzyloxycarbonyl protecting group at the focal point of our small first generation dendrons into a cholesterol unit, to make Chol-G1 switched on ultra-high affinity binding of DNA. Furthermore, although Chol-G2 had a much larger binding array than Chol-G1 it was actually much less effective (i.e. less is more).27 Multiscale modelling studies indicated that Chol-G2 is unable to self-assemble effectively as it is dominated by the hydrophilic, large dendritic head group – the poorly packed SAMul nanostructure therefore had a much lower surface charge density (Fig. 4B). This demonstrates the importance of balancing the potential of self-assembly and multivalency to optimise binding. We were not the first in the literature to recognise that self-assembly could organise multivalent ligand displays – indeed, this was reported by the Whitesides group as early as 1992,28 but we did bring this disparate field together in a key review of the quantitative studies of self-assembled multivalency.29 We went on to refer to self-assembled multivalency as ‘SAMul’, in honour of my husband, Sam (Samuel) Smith.
It is tempting to think that a SAMul binding effect will either be turned ‘on’ or ‘off’ depending simply on whether or not the system is, or is not, self-assembled. However, in a structure–activity relationship study we varied the hydrophobe and found that this simple relationship was not the case.30 Hydrophobes that were better able to drive self-assembly gave rise to self-assembled micellar nanostructures with higher surface charge densities. Indeed the cationic charge density could be tuned across a range. These systems then showed tunable DNA binding affinities primarily as a result of their different charge densities, resulting from the hydrophobic tuning. This clearly demonstrates that SAMul systems can have tunable binding affinities depending on the precise structure.
When modified with hydrophobic units, the gene delivery potential was also enhanced26 over the baseline results for the non-self-assembling dendrons.31 We reasoned that the cationic lipid nature of these systems assists delivery – it is known that lipids can enable endosomal escape, via a flip-flop mechanism.32 The best vector was Chol2-G1, which has a relatively large hydrophobic component. Multiscale modelling suggested this system could assemble into cylindrical micelles at elevated concentrations typical of, for example, endosomes, and form a hexagonal phase.27 This is in accord with Israelachvili principles of self-assembly that state that the hydrophobic/hydrophilic ratio of lipids program-in the preferred assembly mode of surfactants.33 It is known that lipids capable of forming hexagonal phases are preferred for endosomal escape.34 We also found there were synergistic advantages for gene delivery of mixing lipid-like and polymer-like systems.
We explored related morphological effects on the self-assembly of multivalent systems using a series of RGD-peptide modified lipids. RGD peptides can enhance cell targeting owing to interactions with integrin receptors on cell surfaces35 – we developed such systems to mix into our gene delivery vehicles and enhance delivery. We initially demonstrated that self-assembled RGD-peptides bound integrins as effectively as covalent dendritic multivalent equivalents – a clear SAMul effect.36 Once again, the hydrophobic/hydrophilic balance modified the morphology of the SAMul systems.37 Spherical assemblies performed better in our integrin binding assay than cylindrical micelles, possibly because of the more effective ligand display, with each head group having more space at the highly curved spherical surface, therefore demonstrating that SAMul binding responds to nanoscale morphology.
In a key study, we brought together our new concepts, and reported a family of degradable SAMul dendrons (e.g.Chol-G2Ester-DAPMA, Chol2-G2Ester-DAPMA and C22-G2Ester-DAPMA, Fig. 5) and explored their DNA binding and gene delivery potential.38 Although these compounds showed useful degradation profiles under physiological conditions of pH and ionic strength, they did not degrade once bound to DNA. We determined that hydrolysis of the esters within the structure was accelerated by the peripheral amine ligands via an intramolecular catalytic acceleration at physiological pH (Fig. 5B). Hydrolysis was switched off at lower pH values (owing to amine protonation) and in the presence of DNA (owing to amine–DNA binding). Sadly, this degradation profile was therefore less useful for gene delivery in vitro and DNA release is problematic. As such, these results were somewhat disappointing – although they led to significant breakthroughs in other potential areas of therapy, as described later.
In addition, we co-assembled PEG lipids with a SAMul dendron to modify the DNA binding affinity.39 One of these modified the ability of the co-assembly to cross a model mucus layer, an important step in therapeutic delivery to the CF lung. We rationalised these effects in terms of a balance between the mucoadhesivity due to the surface charge of the nanoscale aggregates and that due to the PEG groups. This clearly demonstrated the potential of co-assembly as a simple strategy for modifying and optimising the performance of SAMul systems for biomedical use.
We also reported a ‘double degradable’ approach to SAMul systems in which a disulfide linker was incorporated between the hydrophobic unit and the multivalent head group (Chol-SS-G2-Ester, Fig. 6).40 This allows these structures to undergo triggered reductive cleavage, with dithiothreitol (DTT) inducing controlled breakdown, enabling the release of bound DNA – another example of temporary ‘on–off’ multivalency. Furthermore, because the multivalent dendrons are constructed from esters, a second slow degradation step takes place converting the dendron into very small molecular-scale building blocks, clearly illustrating the potential of such self-assembled systems including multiple degradable units.
To further translate our approach towards the clinic, in collaboration with Rainer Haag, Marcelo Calderon and co-workers in Berlin, we developed SAMul systems using the general principles described above but with modified molecular designs. For example, our SAMul concept was combined with UV-degradable linkers to generated SAMul systems that were switched off by UV irradiation.41 We also developed other systems (e.g., G2-Ether (A1), Fig. 7) and tested them for siRNA delivery both in vitro and in vivo.42 The ester was in a different orientation to our previous design, and further from the focal point of the dendron, which was active for siRNA delivery, effectively achieving gene silencing in the tumour cell line 786-O (Fig. 7B). It was reasoned that the ester had an effective degradation and siRNA release pathway. Pleasingly, in vivo studies demonstrated that these delivery vehicles, when combined with siRNA, did not elicit major pro-inflammatory cytokine response when tested in vivo in mice (Fig. 7C). Such responses are a frequent problem with gene delivery vehicles,43 and other nanoscale therapeutics, and their absence is very desirable. We anticipate such systems will go on to further development.
We are also delighted that other researchers have applied our SAMul methodology with a high degree of success to siRNA delivery. Notably Ling Peng and her research team developed self-assembling dendritic systems that showed high levels of activity in vitro and considerable potential in vivo.44 We are also now working with researchers across the EU to try and translate some of our gene delivery vectors further, with the ultimate goal of making an impact on cystic fibrosis healthcare. We hope that, in one way or another, enhanced treatments may be forthcoming from key concepts developed here in York, such as SAMul binding and temporary (‘on–off’) multivalency.
While I was sat at Sam's bedside, I reflected on the fact that some of our gene delivery agents, which bind polyanions as described above, suffered from the problem of degrading in the absence of DNA, but not when bound to it.38 Although problematic for gene transfection, this is potentially useful for heparin binding – indeed, the ideal heparin rescue agent should be stable when bound to heparin, so excretion of the intact complex can occur, but should degrade if present in excess. This would potentially allow the patient to be dosed with relatively large amounts of the active agent, as unbound material would degrade into non-toxic by-products. In the case of self-assembled multivalent (SAMul) systems, degradation will also switch off high-affinity binding and thus prevent intervention in other biological pathways.
We therefore developed a simple SAMul system C22-G1 (Fig. 8) that could bind heparin with high affinity.52 This system self-assembled into nanostructures at low concentration (4 μM), displaying cationic ligands capable of heparin binding. The linker between ligands and hydrophobe contained an ester, capable of degrading under physiological conditions. When dried, C22-G1 nanostructures were surprisingly robust, and even in the presence of strongly binding heparin, transmission electron microscopy (TEM) indicated they did not change their spherical nanoscale morphologies, suggesting good stability. On drying with heparin, the micelles organised around the polyanionic heparin to form hierarchical aggregates. More recent studies in collaboration with Mauri Kostiainen have fully characterised the organisation of cationic spherical micelles with polyanionic heparin using small angle X-ray scattering and multiscale modelling.53 This is hierarchical electrostatic self-assembly, in which spherical cationic assemblies close-pack with cylindrical anionic polymers to give face-centred-cubic arrays ca. 50–250 nm in size.
In a later study, we fully characterised C22-G1 nanostructures in solution using dynamic light scattering (DLS). and quantified the binding ability of C22-G1 in more detail. In buffer, C22-G1 was a more effective heparin binder than protamine (Fig. 8).54 Furthermore, comparison of the heparin binding of C22-G1 with an analogue with no hydrophobic unit demonstrated that the C22 chain switches on high-affinity binding – a clear SAMul effect. However, the presence of serum somewhat disrupted the ability of C22-G1 to self-assemble and hence bind heparin – we reasoned this was due to the C22 unit interacting with serum albumin proteins. This can be a problem with self-assembled systems, which can be kinetically labile, and hence disassemble in the presence of competitive influences.55 Nonetheless, this lead compound was active in the PT anti-coagulation assay in human plasma, reversing the anti-coagulant effect of heparin when applied at a clinically useful dose – demonstrating that the SAMul approach can operate in highly competitive, biologically relevant media. We have further stabilised our heparin binders in competitive conditions and developed unpublished modified lead compounds for potential in vivo study.
We have reported the impact of self-assembled morphology on heparin binding using (C12)2-Lys and (C12)2-Lys-Lys2 (Fig. 9).56 As a result of their hydrophobic/hydrophilic ratios, the former compound assembles into worm-like micelles while the latter forms spherical micelles. Although the spherical micelles bind heparin more effectively in buffer because of their more open surfaces and better ligand display, the cylindrical micelles have greater stability against competitive influences, and better maintain their binding ability when buffer is replaced with human serum.
We have also developed heparin sensors. In part, we wanted a heparin sensor for rapid quantification of the relative abilities of our heparin binders via a dye displacement assay. However, there is also a clinical need for heparin sensors that could rapidly assess the total heparin load in a patient's bloodstream, allowing anaesthetists to accurately provide a patient with additional heparin, or heparin-rescue agent. At present, heparin sensing is achieved by performing coagulation assays on blood samples – a relatively time-consuming, off-line process – clearly there is scope to improve this. Amongst heparin sensors in the literature, Azure A was reported to work in highly competitive conditions, and should have been ideal for our purposes.57 However, we were unable to reproduce this, and noted the original experiments were not buffered and may have suffered from pH changes. We therefore decided to develop a new dye with higher affinity towards heparin by modifying the well-known dye thionine acetate with cationic arginine units.58 This was achieved using a simple two-step methodology based on peptide coupling and deprotection in a pleasing overall yield (Fig. 10). We named the resulting dye ‘Mallard Blue’ (MalB) after the steam train of the same colour, which holds the world speed record and is housed in the National Railway Museum here in York (ever since I was a boy I have always loved trains!). This dye is an effective heparin sensor in highly competitive media, and can rapidly detect heparin at clinically relevant concentrations in human serum.
Fig. 10 Synthesis of Mallard Blue based on modification of thionine acetate with Boc-protected arginine, followed by Boc deprotection. (inset) UV-vis response of MalB to the addition of heparin. |
Using MalB, we developed a dye displacement assay for quantification of the performance of heparin binders.59 To demonstrate this assay in action, a family of dendritic compounds with the capacity to bind heparin was investigated – flexible PAMAM dendrimers and more rigid ‘Transgeden’ (TGD) dendrimers (which have peripheral PAMAM units attached to a conjugated core).60 This study indicated fundamental differences between these two families of dendrimers. In the presence of excess heparin, a clinically relevant situation at the start of heparin rescue, TGD outperforms PAMAM because the rigidity of TGD means small clusters/patches of surface amines are locally well-organised for binding. However, when less heparin is present (towards the end of heparin rescue), the overall rigid nanoscale structure of TGD is not sufficiently flexible to maximise all of its contacts with a single heparin binding partner (Fig. 11). We described TGD as showing shape-persistent multivalency. Conversely, in PAMAM dendrimers, the individual surface ligands are not so well locally optimised for target binding, but the flexibility of the overall nanostructure allows it to adapt its global shape more easily and hence maximise the total number and efficiency of contacts with the binding partner (Fig. 11). We referred to this behaviour as adaptive multivalency. We suggest that these fundamental differences are of considerable significance in multivalent binding. Once again therefore, adventures into applied research gave rise to new insights.
To develop heparin sensor technology further, it was desirable to develop sensors with an easily detectable fluorescent output, at two different wavelengths for ratiometric sensing. We therefore developed a heparin sensor incorporating pyrene.61 In buffered water, the sensor formed self-assembled multivalent (SAMul) nanostructures providing it with a significant (order of magnitude) improvement in dynamic range. Further, it gave a naked eye response unlike other pyrene derivatives. At elevated heparin concentrations, SAMul-enhanced sensing was also observed even in 100% serum. However, SAMul-enhanced sensing did not persist in serum at biomedically relevant concentrations. It is therefore interesting to reflect just how good the heparin sensing capacity of Mallard Blue is, being able to detect the polyanion at very low concentrations even in highly competitive conditions. This dye must be particularly optimised for the structural motifs dominant in heparin. Indeed, these observations led us to reflect on the role structural optimisation plays in electrostatic binding.
We developed chiral SAMul systems that achieved enantioselective polyanion binding (Fig. 12).66C22-L-Lys and C22-D-Lys are identical in every way apart from the chirality of the cationic lysine ligands that end up displayed on the surface of the SAMul nanostructure. Obviously, these two enantiomeric ligands have identical critical micelle concentrations, and form systems with identical dimensions and surface charges – just different chiralities. Interestingly, however, they bound to heparin and DNA with significant differences. Heparin bound preferentially to C22-D-Lys, while DNA had a preference for C22-L-Lys. This clearly demonstrates that charge density is not the only factor controlling binding affinity, and that the precise molecular-scale optimisation of the nanoscale binding interface plays a key role. Although chiral recognition of these polyanions is not new,67 it was surprising that our simple SAMul nanostructures could achieve this. Furthermore, this was the first report in which different polyanions expressed opposite enantioselectivities. Given the crucial roles played by each of these highly charged anions, we speculate whether such selectivities may help biology regulate the ubiquitous and complex ‘polyanion world’.
Extending this research further, chiral amino acid modifications were made to a very simple amphiphile (C16-Lys and C16-Gly-Lys).68 The presence of a glycine spacer unit between the hydrophobic unit and the cationic head-group was essential in enabling chiral recognition. Modelling proposed that the glycine spacer changed the polarity and shape of the amphiphile and hence modified the self-assembled morphology, enabling optimisation of the binding interface and yielding greater selectivity.
We also explored the impact of ligand modification on polyanion binding in SAMul systems.69 Palmitic acid was modified with a series of amines with different charges, yielding three different micellar assemblies (C16-SPM [4+], C16-SPD [3+] and C16-DAPMA [2+]) (Fig. 13). Overall, C16-SPM formed the loosest assembly, while C16-DAPMA was the most effectively packed with the highest surface charge. Intriguingly in our DNA-binding assays, DNA bound C16-SPM > C16-DAPMA > C16-SPD, whereas heparin bound C16-SPD > C16-SPM > C16-DAPMA. Clearly therefore, neither simple ligand charge nor micellar surface charge density, control the binding event. A combination of experimental (isothermal calorimetry, ITC) and simulation (multiscale modelling) techniques provided insight into the thermodynamics of binding. We proposed inherent differences between the polyanions, suggesting that DNA was shape-persistent while heparin was adaptive (Fig. 13). As such, shape-persistent DNA simply binds the charges it is presented with as best as it can. Spermine ligands are well adapted to bind DNA, have the highest individual charge, and therefore C16-SPM was the preferred binding partner. Conversely, adaptive heparin can modify its shape on binding to the SAMul nanostructure, meaning both ligand and polyanion optimise their mutual interactions. This led to C16-SPD being preferred, with heparin adapting and optimising each individual electrostatic interaction. This work indicates how selectivity may be achieved in the polyanion world, and suggests fundamental differences between polyanions. Interestingly, flexibility has been highlighted as a key beneficial factor in biological heparin binding proteins,70 which would agree with this view of heparin as an adaptive binding partner and suggest it might have genuine biological significance.
The hydrophobic unit can also affect the SAMul binding event. To demonstrate this, we synthesised a family of molecules with the same cationic ligand (DAPMA) and a hydrophobic aliphatic group with eighteen carbon atoms, but having one, two, or three alkenes within the hydrophobic chain (C18-1, C18-2 and C18-3, Fig. 14).71 The presence of more alkenes led to geometric distortion, yielding larger self-assembled multivalent (SAMul) nanostructures and hence modifying the ligand display. Polyanion binding was studied using dye displacement assays and ITC, with data in agreement that heparin bound most effectively to C18-1, and DNA to C18-3, even though the molecular-scale structural differences of the SAMul systems are buried in the hydrophobic core. Multiscale modelling suggested that adaptive heparin somewhat folds around smaller C18-1 assemblies maximising enthalpically favourable interactions, while ‘shape-persistent’ DNA cannot easily bend, and forms a similar number of interactions with each assembly, but with less entropic cost for binding to the larger flatter surface of C18-3. Once again, this provides fundamental insight into electrostatic molecular recognition in biologically relevant systems and suggests not all polyanions are the same.
The impact of buffer on SAMul electrostatic recognition has also been studied.72 ITC and dye displacement assays indicated that the binding of C16-DAPMA to heparin was significantly stronger in Tris–HCl > HEPES > phosphate. This results from interactions between the anionic buffer component (phosphate/sulfonate/chloride) and the cationic binder. Such interactions occur in 10 mM buffer, even in the presence of 150 mM NaCl. Furthermore, even a ‘Good’ buffer such as HEPES competes at the binding interface. The impact of buffer on SAMul nanostructures was even more significant than on a simple heparin binder such as MalB. ITC was used to determine the difference in ΔG for heparin binding between Tris–HCl and phosphate buffer. This buffer induced difference was 1.20 kcal mol−1 for MalB (14.1% of the total) but rose to 1.77 kcal mol−1 for C16-DAPMA (21.9% of the total). The greater adverse effect of competitive buffers on SAMul systems arose from a decrease in the larger enthalpic term resulting from the highly charged multivalent binding interface. This study highlighted the importance of choosing even often-overlooked species, such as buffers,73 very carefully in molecular recognition studies and demonstrated that highly charged nanoscale binding interfaces are sensitive to buffer.
Once again, by starting with an application in mind, we have uncovered new fundamental concepts. This has led to the emergence of ideas such as shape-persistent and adaptive multivalency. Furthermore, the medical drive behind our work has meant all of our anion binding studies have transitioned from organic solvents into, as a minimum, buffered water with high levels of competitive salt. We believe that understanding binding interactions in highly competitive and complex media (e.g. buffers, human serum or blood), with multiple competing influences – will emerge as a key theme of supramolecular chemistry over the coming 10 years, with many more chemists starting to explore this fascinating but challenging ‘real world’.
Our fundamental research on ‘supramolecular gels’ had, for example, demonstrated that such materials were highly responsive – capable of selecting and releasing specific components from complex mixtures76 and evolving their structures over time in response to different stimuli.77 We realised that these would be useful features in materials for drug delivery. There was just one problem – all of our long-established gels were only stable in organic solvents such as toluene, being held together by intermolecular hydrogen bond interactions between peptide building blocks. The presence of competitive media was simply too disruptive, leading to fibril disassembly and gel breakdown. We therefore set ourselves the challenge of developing a simple new commercially-viable hydrogelator that operated in water. Such a system could open up a range of biomedical (and other) applications.78
For inspiration, we turned to one of the best known families of gelator – 1,3:2,4-dibenzylidenesorbitol (DBS) – about which we wrote a key review.79 First reported by Meunier in 1891 as a product of the reaction between sorbitol and two equivalents of benzaldehyde,80 DBS gels have been widely applied in an industrial setting over the past century. DBS has been self-assembled in polymers to enhance transparency.81 It has also been used as the gelation component in personal care products such as deodorant sticks.82 However, DBS is always used in organic solvents or polymer melts. In pure water, it struggles to self-assemble into an effective gel owing to its poor solubility – indeed, solvent effects on DBS self-assembly have recently been studied in detail.83 DBS is often described as a butterfly-like surfactant, with the sorbitol unit as the body and the aromatic rings as the wings. It assembles into fibrils as a result of intermolecular hydrogen bond interactions via the body and solvophobic/π–π interactions between the wings (Fig. 16), with the balance depending on the solvent in which the gelator assembles.
Fig. 16 (top) New DBS hydrogelators DBS-COHNH2, DBS-COOH and DBS-Gly-COOH developed by us, and (bottom) self-assembly mode of DBS-CONHNH2 as modelled by Knani and Alperstein.88 |
We therefore decided to target hydrogels using this simple, yet versatile, molecular framework. Derivatives of DBS were reasonably well-known, as benzaldehyde can simply be replaced with a substituted benzaldehyde during synthesis. However, only simple substituents (e.g. Me, F, etc.) had been used to modify the performance for a specific industrial application.84 We wanted to insert functional groups that might increase the solubility of DBS in water, hence opening the possibility of hydrogel formation. Surprisingly, this had not previously been reported. Using a methyl ester of 4-carboxybenzaldehyde gave access to DBS-COOMe, and inserted a functional handle onto DBS that could be simply converted into an acid (DBS-COOH)85 or an acylhydrazide (DBS-CONHNH2)86 (Fig. 16). Pleasingly, this strategy worked and both of these compounds could be synthesised on large scale and could form hydrogels – a very significant step forwards for DBS chemistry. We further extended this family of hydrogels by modifying DBS-COOH to yield DBS-Gly-COOH.87 Following our discovery of these hydrogels, Knani and Alperstein's computer simulation suggested that hydrogen bonding between the sorbitol ‘bodies’ of the gelator were weakened by the presence of water, and that the aromatic rings were rigidified.88
The carboxylic acid, DBS-COOH, formed gels via protonation of the highly soluble carboxylate anion, yielding the less soluble carboxylic acid form, and allowing the ‘solid-like’ gel fibres to assemble with a degree of controlled kinetics in order to form a sample-spanning network.85 This was achieved using the well-established glucono-δ-lactone hydrolysis slow acidification method, as pioneered by the Adams group.89 The acylhydrazide, DBS-CONHNH2, was stable across the entire pH range from 2–12,86 and the solubility of this gelator was such that sample-spanning gels could be formed simply by heating and cooling a sample in water. Many well-established hydrogels are based on carboxylic acids, and require pH manipulation to form gels – we noted that acylhydrazides may potentially be effective carboxylic acid replacements in a wide-range of hydrogels.86 In this way, a new insight into gelators emerged from our application-driven hunt for new hydrogels.
We were then interested in the ability of these DBS-CONHNH2 gels to bind and release active agents with the ultimate goal of controlled drug release. The ability of this gel to extract pollutant dyes from model waste water was initially tested, as this is a quick and easy visual test – it was rapidly possible to screen the gel against a variety of different dyes in order to explore uptake selectivity.86 Dye extraction was controlled both by the structure of the dye, and pH. Fully-ionised dyes were less readily adsorbed onto the self-assembled gel fibres, presumably as a consequence of their higher water solubility. Changing pH altered the ionisation state of the dyes and hence provided a mechanism for desorbing dyes from the gel, meaning the gel could be used for repeat cycles of uptake and release. It is worth noting that this strategy is of great interest for remediating polluted water – indeed gels are highly effective in this application as a result of the nanoscale fibres having high relative surface areas, able to achieve very efficient uptake.90
Moving on from dyes towards biologically-relevant substances, we explored the ability of the DBS-CONHNH2 hydrogel to bind active pharmaceutical ingredients (APIs) – specifically, acid-functionalised non-steroidal anti-inflammatory drugs (NSAIDs), such as ibuprofen and naproxen.91 The gel could form in the presence of these APIs, and there were direct interactions between the acid on the API and the NH2 group displayed on the surface of the gel fibres – another form of self-assembled multivalent (SAMul) ligand display (Fig. 17). Interestingly, the APIs were immobilised at low pH values (<5), but once the pH was increased, they were desorbed from the gel, as the carboxylic acid became ionised and no longer interacted with the gel nanofibres. These hydrogels therefore achieved pH-triggered drug release of pharmaceutical relevance – the stomach has low pH (2–3) conditions, while the intestine, where drug release is most desirable is pH 7–8. As such, gels based on DBS-CONHNH2 can achieve targeted delivery of acid-functionalised APIs. Interestingly, naproxen causes well-documented side effects within the stomach, which can be particularly severe for patients who have longer-term use of such drugs, for example after major surgery.92 Most importantly, however, this study exemplified that self-assembled multivalent gel-phase materials can achieve controlled binding and release of a biologically active species in the presence of a triggering stimulus. We suggest that in the future, this might be of relevance to controlled delivery of a wide range of acid-functionalised APIs, such as statins.
One disadvantage of self-assembled supramolecular hydrogels, such as DBS-CONHNH2, is that they are mechanically weak materials. This may be desirable for drug formulation for (e.g.) transdermal delivery, but is less suitable for delivery via an oral route. This weakness is a direct result of the reversible non-covalent forces that hold together self-assembled gels. In contrast, polymer gels can be significantly more robust owing to the covalent constitution of the network. As such, we reasoned that combining the two types of material into hybrid hydrogels would offer significant synergistic advantages (Fig. 18). To demonstrate this principle, we combined self-assembling low-molecular-weight gelator (LMWG) DBS-COOH with a typical polymer gelator (PG), agarose.85 The LMWG assembles on lowering pH, while the PG network forms by applying a heat–cool cycle. Using orthogonal methods of network formation is a useful tool for enabling their sequential formation. We demonstrated that the LMWG network could then be disassembled by raising pH, while the agarose PG network ensured the overall hybrid hydrogel remained intact. As such, these materials had both responsive and robust components. We reviewed this general approach to hybrid LMWG/PG gels, collecting together all the examples-to-date in a field-defining article.93
Fig. 18 Schematic of hybrid hydrogels formed by combination of a responsive self-assembling LMWG network and a more robust polymer gel (PG) network. |
Extending this approach, we recently combined DBS-CONHNH2 with a photo-initiated crosslinked polymer hydrogel based on poly(ethyleneglycol dimethacrylate) (PEGDM) and loaded the resulting gels with naproxen.94 The PEGDM provides mechanical strength and gives the hybrid hydrogel a self-supporting nature, while the self-assembled DBS-CONHNH2 network interacts with naproxen and controls its release depending on the pH of the surroundings. On exposing different sides of the gel to solutions with different pH values, directional release of the drug was achieved, controlled by the pH. We refer to this as directional release (Fig. 19). It opens the longer-term possibility of making gels with defined shapes in which the self-assembled network controls drug release in a directional manner under the influence of different stimuli towards a desired target. Such gels could, for example, be loaded with therapeutic agents and implanted into patients after surgery, releasing the drugs in a directional manner in response to biological stimuli. Further research in this direction is currently in progress in our labs.
Fig. 19 Directional release of naproxen from a hybrid hydrogel based on DBS-CONHNH2 and PEGDM with release of the drug occurring preferentially into a solution of pH 7 in comparison to one of pH 3. |
It is worth emphasising that much tissue engineering research has been carried out using polymer hydrogels.100 However, we (and others) reasoned that self-assembled low-molecular-weight gels may offer significant advantages for tissue engineering. Self-assembled materials have the advantage of being highly responsive, and they can disassemble into individual molecular-scale building blocks. This offers a significant advantage for 3D tissue engineering, in which tissue is grown within a gel, as the gel could be simply removed, and the tissue recovered.102 Some early work in this field achieved eye-catching in vivo results using self-assembled hydrogels based on relatively complex peptides, including nerve regeneration within the optic nerve and spinal cord, restoring function in disabled animal models.103 However, there has been less research making use of very simple low-molecular-weight gelators for tissue engineering.
In many ways, it is relatively straightforward to perform simple cell tissue culture on gels. What is more challenging, is to encourage the cells to do interesting and sophisticated things, which may be required for the growth of complex tissue such as organs. As such, our initial focus has been on adding functionality to our hydrogels so that not only can we grow tissue, but hopefully we can do it in smarter and more directed ways. In this way, heading towards our ultimate application, we reasoned that new fundamental insights would also emerge. In particular, we targeted incorporating the following features into LMWG hydrogels:
• Binding and release of active agents (this could help direct, control, or respond to, cell growth). Our work described in the previous section on controlled drug release is a step towards this goal.
• Conductive gels (tissue grown on such materials may then be stimulated electrically to achieve differential growth).104
• Spatially resolved multicomponent materials with multiple domains, each having different properties (this may facilitate spatially resolved and defined tissue growth).
These innovations would yield smarter LMWG hydrogels moving the state-of-the-art significantly forwards. In the long run, this may generate soft materials with the capacity to exert both temporal and spatial control over cell growth, directing biological outcomes, with the gels being capable of precise levels of intervention, and responsive to the growing tissue.
LMWG hydrogelator, DBS-Gly-COOH, opened up the possibility of patterning one self-assembled gel within another for the first time.87 The different pKa values of DBS-COOH (ca. 5.5) and DBS-Gly-COOH (ca. 4.5) mean they assemble sequentially as the pH is lowered. Careful control of conditions allowed us to form the DBS-COOH network using an equimolar chemical source of acid (glucono-δ-lactone), with the DBS-Gly-COOH network being subsequently assembled by activating a photo-acid (diphenyliodonium nitrate) under UV-stimulation. Performing the photo-acidification through a mask allowed us to ‘write’ a DBS-Gly-COOH network into a preformed DBS-COOH gel (Fig. 23). Interestingly, the first gel network is essential if the second network is to be patterned in with good spatial resolution. We reason that pattered multi-domain self-assembled LMWG gels such as these may spatially direct cell growth and then at a later stage, unlike many polymer gels, can be easily disassembled.
We suggest that combining controlled release, conductivity and spatial control within LMWGs yields a unique platform of technologies to develop innovative tissue engineering materials. To demonstrate these systems are compatible with tissue growth, experiments were performed with 3T3 Mouse Fibroblast cells, and it was shown that these could indeed grow effectively on simple DBS-CONHNH2.111 A major EPSRC grant is now enabling us to translate our fundamental gel technologies into controlled tissue engineering materials. Indeed, we look forward to continuing to develop new fundamental approaches and strategies in gel-phase materials and translating these into medicinal applications. We believe that explorations of smart self-assembled materials in biomedical applications will occupy much of our attention for the next 10 years and beyond.
• Flexible multivalency: screening and sacrifice. Flexibility in multivalent binding systems has advantages – e.g., flexible ligands can reorganise and shield electrostatic binding interfaces from competitive electrolyte.16
• Self-assembled multivalency (SAMul). Self-assembly can organise dynamic tunable multivalent ligand arrays.26,27,29a,54
• Temporary ‘on–off’ multivalency. Multivalent arrays that can degrade and/or disassemble enable high-affinity multivalency to be turned off, limiting persistence and potential toxicity.20,38,40
• Adaptive and shape persistent multivalency. Fundamental differences between the binding of polyanionic heparin and DNA suggest the former is adaptive and the latter shape-persistent.60,69,71
• Selective electrostatic binding. Electrostatic binding does not only depend on charge density – selectivity can be achieved based on the precise details of ligand structure.66,68,69
• Specific buffer effects. The choice of buffer, an often over-looked component, can impact on electrostatic binding, changing dissociation constants up-to 20-fold.72
• New DBS hydrogels. In the search for biorelevant systems, three new commercially-relevant hydrogelators based on 1,3:2,4-dibenzylidenesorbitol (DBS) have been developed.85–87
• Supramolecular controlled release. Gel nanofibres that form supramolecular interactions with (e.g.) drug molecules can control release profiles.91,94
• LMWG/PG hybrid hydrogels. Hybrid gels combining LMWG and PG gels can gain the advantage of synergistic effects from both networks.85,93,110
• Spatially resolved self-assembled hydrogels. Spatial resolution can fabricate complex self-assembled gels – moving LMWGs beyond being simple gels in vials.87,94,110
In addition to these fundamental insights and new strategic approaches, our research now approaches varied applications, and progress is ongoing in each of the following biomedically-relevant areas:
(i) Gene delivery. SAMul systems have been optimised in terms of morphology, and synergistic advantages of mixing different self-assembling units have been demonstrated. Optimised systems can achieve effective siRNA delivery in vitro and do not elicit an inflammatory response in vivo.
(ii) Coagulation control. Clotting times can be controlled in coagulation assays in human plasma using SAMul systems. Further stabilisation of self-assembled systems in highly competitive biological conditions is of key ongoing importance before translation in vivo.
(iii) Heparin sensing. Mallard Blue operates effectively in human serum/plasma and detects heparin using simple readouts. Further work to develop dual wavelength sensors is ongoing.
(iv) Drug formulation. Key drugs (e.g. naproxen) can be formulated in gels for controlled release. Gels are currently being tested in a range of settings, and for different modes of drug delivery, with directional release at controlled rates from shaped gels opening new paradigms in drug delivery.
(v) Tissue engineering. Combining release of active ingredients, conductivity and spatial resolution should encourage stem cells to grow in complex and sophisticated ways as a result of the chemistry programmed into self-assembled gels.
As illustrated by this article, the last ten years in our laboratory have been fruitful and stimulating. Approaching applied targets has not only provided a guiding principle behind some of our research, it has motivated young researchers, and inspired us to persevere through the inevitable string of paper and grant rejections. Furthermore, as well as heading towards these vital medical applications, we feel we have also become better fundamental scientists – developing new paradigms that are increasingly being applied in other scientists’ labs.
As scientists, we rarely talk about the personal – after all, the underpinning philosophy of science is that whoever performs the studies, the results will be the same. However, I strongly believe that personal experiences and interests can direct project development and enable intellectual connections between diverse areas of science in unique ways. The personal really does matter, and we need to support diverse scientists, so that diverse solutions to problems can be found.112 As I write this, given Sam's health problems, it is difficult to know what the future will bring personally, but I know that professionally, the decision to let the ‘personal’ influence my direction of academic travel is one that I will never regret.
This journal is © The Royal Society of Chemistry 2018 |