Laura R.
Blackholly
a,
Helena J.
Shepherd
b and
Jennifer R.
Hiscock
*b
aSchool of Biosciences, University of Kent, Park Wood Road, Canterbury, Kent CT2 7NH, UK
bSchool of Physical Sciences, University of Kent, Park Wood Road, Canterbury, Kent CT2 7NH, UK. E-mail: J.R.Hiscock@Kent.ac.uk; Tel: +44 (0)1227 823043
First published on 1st September 2016
Herein, we present the synthesis of ten structurally related ‘frustrated’ amphiphiles, from which were obtained eleven single crystal X-ray structures, allowing observation of the hydrogen bonding modes present in the solid state. We previously reported the synthesis of a novel amphiphilic salt which contains both hydrogen bond donating (HBD) and hydrogen bond accepting (HBA) functionalities. This amphiphilic salt was shown to self-associate in the solution state, aided by the formation of hydrogen bonds. The exact nature of the hydrogen bonding modes involved in this self-association process remains unclear due to the combination of HBD and HBA groups present in the amphiphile structure. This results in a ‘frustrated’ system with access to a variety of possible hydrogen bonding modes.
The properties of anion-spacer-urea based amphiphiles have been studied extensively by Faustino and co-workers in the solution state.11–14 Examples from this family of compounds have been shown to exhibit similar critical micelle concentrations to that of sodium dodecanoate. This is attributed to the hydrogen bonding properties of the urea functionality.15 Our prior solution state work has centred on the in situ hydrogen bonding mode manipulation of the self-associated sulfonate-urea amphiphile, shown in Fig. 1. This type of sulfonate-urea based amphiphile contains two possible hydrogen bond acceptor (HBA) sites, the urea oxygen and sulfonate functionalities. However there is only one hydrogen bond donating (HBD) urea group. This results in a ‘frustrated’ system which can adopt a number of possible hydrogen bonding modes, as shown in Scheme 1. The modification of the different self-associated modes present was achieved through the addition of competitive HBD and HBA species. However, gaining insight into the exact nature of the hydrogen bonding modes present under specific conditions is no trivial task.10
In order to gain further knowledge as to how the hydrogen bonding modes adopted by this class of amphiphilic salt maybe altered by the chemical composition of the amphiphile, a total of ten related salts (1–10, Table 1) have now been synthesised. The R and X groups of 1–10 have been altered in a stepwise fashion to modify the acidity of the HBD NH groups while the substitution of different counter cations explore ion pair effects. Eleven different single crystal X-ray structures have been obtained from 1–10 resulting in the comparative chemical structure-hydrogen bonding mode study presented herein. It should not be assumed that the X-ray structures presented here accurately predict solution state behaviour as solvent and packing effects amongst others may alter the self-associative mode observed in either state. However, this study does provide an insight into the fundamental self-associative modes that this class of compound are capable of adopting and the forces that may affect the presence of one binding mode over another. In Details for the synthesis of these single crystals are given in the ESI.†
In general, a suitable crystal of each compound was selected and mounted on a Rigaku Oxford Diffraction Supernova diffractometer. Data were collected using Cu Kα radiation to a maximum resolution of 0.84 Å. Each crystal was kept at 100(1) K during data collection, with the exception of compound 1, which was collected at 300 K due to crystal shattering on cooling below room temperature. In all cases the crystal temperature was controlled using an Oxford Cryosystems 800-series Cryostream. The structure was solved with the ShelXT16 structure solution program using Direct Methods and refined with ShelXL17 on Least Squares minimisation. Olex218 was used as an interface to all ShelX programs.
Several of these compounds were crystalised as water solvates as discussed in the text and detailed in Table 2. The crystal structure of 5 also includes half a DMSO molecule per anion/cation pair. There is minor to moderate disorder observed in the TBA moieties of several structures (compounds 1, 3b, 4, 5, 6 and 7). This is common for compounds with long alkyl chains and was modelled using a combination of restraints and constraints as appropriate to ensure a stable and chemically sensible model. There is also some minor disorder in the sulfonate-urea moieties in compounds 1 and 7, and the DMSO in compound 5, all of which were modelled in a similar fashion. Full refinement details can be found in the associated cifs.‡
Compound | 1 | 2 | 3b | 4 | 5 | 6 | 7 | 9 | 10 |
---|---|---|---|---|---|---|---|---|---|
Empirical formula | C25H47N3O5S | C24H47N3O5S | C24H45N4O7.5S | C25H45F3N3O4.5S | C26H48F3N3O4S2.5 | C26H43F6N3O4S | C26H43F6N3O4S2 | C9H10F3N2NaO5S | C14H14F3N3O4S |
Formula weight | 501.72 | 489.70 | 525.70 | 548.70 | 603.82 | 607.51 | 639.75 | 338.24 | 377.34 |
Temperature/K | 300(1) | 100(1) | 100(1) | 100(1) | 100(1) | 100(1) | 100(1) | 100(1) | 100(1) |
Crystal system | Triclinic | Orthorhombic | Monoclinic | Monoclinic | Triclinic | Monoclinic | Triclinic | Orthorhombic | Triclinic |
Space group | P | Pna21 | C2/c | C2/c | P | P21/n | P | P212121 | P |
a/Å | 10.8520(3) | 9.33311(13) | 19.1853(5) | 19.4863(8) | 12.3465(7) | 13.3272(4) | 12.1225(5) | 4.8741(3) | 9.1526(3) |
b/Å | 14.2506(6) | 18.8139(3) | 16.9662(4) | 16.9500(6) | 13.2148(9) | 20.7771(6) | 13.1483(4) | 6.3672(4) | 12.9487(5) |
c/Å | 19.6911(8) | 15.7107(2) | 19.0342(5) | 19.0704(5) | 20.8662(10) | 22.3152(6) | 21.4144(11) | 40.456(3) | 13.3592(6) |
α/° | 96.202(3) | 78.866(5) | 74.424(4) | 93.444(4) | |||||
β/° | 103.112(3) | 109.850(3) | 110.145(4) | 76.851(4) | 92.086(3) | 87.100(4) | 97.949(3) | ||
γ/° | 94.223(3) | 82.631(5) | 84.476(3) | 92.527(3) | |||||
Volume/Å3 | 2933.22(19) | 2758.68(7) | 5827.5(3) | 5913.5(4) | 3240.1(3) | 6175.0(3) | 3271.5(2) | 1255.54(14) | 1563.01(11) |
Z | 4 | 4 | 4 | 8 | 2 | 4 | 4 | 4 | 4 |
ρ calc g cm−3 | 1.136 | 1.179 | 1.198 | 1.233 | 1.238 | 1.307 | 1.299 | 1.789 | 1.604 |
Crystal size/mm3 | 0.274 × 0.117 × 0.033 | 0.372 × 0.06 × 0.047 | 0.507 × 0.18 × 0.094 | 0.212 × 0.083 × 0.067 | 0.136 × 0.05 × 0.017 | 0.335 × 0.07 × 0.026 | 0.28 × 0.106 × 0.004 | 0.596 × 0.103 × 0.087 | 0.324 × 0.181 × 0.132 |
Radiation | CuKα (λ = 1.54184) | CuKα (λ = 1.54184) | CuKα (λ = 1.54184) | CuKα (λ = 1.54184) | CuKα (λ = 1.54184) | CuKα (λ = 1.54184) | CuKα (λ = 1.54184) | CuKα (λ = 1.54184) | CuKα (λ = 1.54184) |
2Θ range for data collection/° | 4.646 to 133.184 | 7.33 to 146.048 | 7.152 to 146.196 | 7.11 to 133.2 | 4.412 to 133.198 | 5.814 to 146.124 | 7.006 to 133.2 | 4.368 to 145.696 | 6.696 to 145.966 |
Index ranges | −8 ≤ h ≤ 12, −16 ≤ k ≤ 15, −23 ≤ l ≤ 23 | −11 ≤ h ≤ 6, −22 ≤ k ≤ 20, −13 ≤ l ≤ 19 | −23 ≤ h ≤ 19, −14 ≤ k ≤ 20, −23 ≤ l ≤ 22 | −18 ≤ h ≤ 23, −14 ≤ k ≤ 20, −20 ≤ l ≤ 22 | −10 ≤ h ≤ 14, −14 ≤ k ≤ 15, −20 ≤ l ≤ 24 | −16 ≤ h ≤ 15, −25 ≤ k ≤ 25, −27 ≤ l ≤ 26 | −14 ≤ h ≤ 14, −12 ≤ k ≤ 15, −24 ≤ l ≤ 25 | −5 ≤ h ≤ 4, −7 ≤ k ≤ 7, −49 ≤ l ≤ 47 | −7 ≤ h ≤ 11, −14 ≤ k ≤ 16, −16 ≤ l ≤ 15 |
Reflections collected | 20872 | 6432 | 11139 | 9536 | 21922 | 25495 | 21742 | 7871 | 10664 |
Independent reflections | 11353 | 3810 | 5674 | 5202 | 11448 | 12024 | 11568 | 2439 | 6036 |
R int = 0.0179 | R int = 0.0241 | R int = 0.0305 | R int = 0.0146 | R int = 0.0564 | R int = 0.0386 | R int = 0.0335 | R int = 0.0288 | R int = 0.0229 | |
R sigma = 0.0261 | R sigma = 0.0365 | R sigma = 0.0315 | R sigma = 0.0200 | R sigma = 0.0942 | R sigma = 0.0479 | R sigma = 0.0475 | R sigma = 0.0262 | R sigma = 0.0283 | |
Data/restraints/parameters | 11353/549/724 | 3810/1/309 | 5674/176/381 | 5202/926/486 | 11448/36/717 | 12024/45/748 | 11568/898/896 | 2439/0/192 | 6036/0/455 |
GOOF on F2 | 1.031 | 1.031 | 1.034 | 1.045 | 1.034 | 1.017 | 1.055 | 1.066 | 1.128 |
Final R indexes [I ≥ 2σ(I)] | R 1 = 0.0564 | R 1 = 0.0300 | R 1 = 0.0794 | R 1 = 0.0602 | R 1 = 0.0543 | R 1 = 0.0447 | R 1 = 0.1110 | R 1 = 0.0279 | R 1 = 0.0424 |
wR2 = 0.1675 | wR2 = 0.0750 | wR2 = 0.2289 | wR2 = 0.1485 | wR2 = 0.1208 | wR2 = 0.1058 | wR2 = 0.3006 | wR2 = 0.0697 | wR2 = 0.1103 | |
Final R indexes [all data] | R 1 = 0.0789 | R 1 = 0.0316 | R 1 = 0.0860 | R 1 = 0.0690 | R 1 = 0.0819 | R 1 = 0.0581 | R 1 = 0.1342 | R 1 = 0.0288 | R 1 = 0.0441 |
wR2 = 0.1933 | wR2 = 0.0764 | wR2 = 0.2406 | wR2 = 0.1558 | wR2 = 0.1386 | wR2 = 0.1152 | wR2 = 0.3293 | wR2 = 0.0701 | wR2 = 0.1113 | |
Largest diff. peak/hole/e Å−3 | 0.39/−0.22 | 0.35/−0.31 | 0.51/−0.63 | 0.50/−0.47 | 0.49/−0.69 | 0.30/−0.41 | 1.77/−0.95 | 0.31/−0.40 | 0.45/−0.55 |
Flack parameter | 0.033(16) | 0.34(2) |
Fig. 2 Mean hydrogen bond angles (°) and lengths (Å) responsible for the anion–urea binding modes in each of the eight different crystal structures obtained from compounds 1, 2, 3 (+ = 3a; X = 3b), 4, 5, 6, 7. Table S1† details individual hydrogen bond lengths, angles and associated errors observed in each single crystal X-ray structure. |
Fig. 3 Correlation between Hammett substituent constants20 (σ) and mean hydrogen bond angles (°) or lengths (Å) responsible for the anion–urea binding modes in each of the six different crystal structures obtained for comparable compounds 1, 2, 3 (3a; 3b), 4, 6. |
As shown in Fig. 4 and 5, structures obtained from 1, 3–7 all exhibit urea–anion dimer formation through the creation of four intermolecular hydrogen bonds, one from each HBD NH to a separate HBA oxygen of an anionic sulfonate group. Conversely 2, (Fig. 6) was found to form urea–anion hydrogen bonded tapes. Unlike the hydrogen bonded dimers, both the HBD NHs of a single urea group coordinate to a single HBA oxygen of a sulfonate functionality.
Single crystal X-ray structures for 2, 3a, 4 and 7 all show the additional coordination of a water molecule to the anionic sulfonate substituent, through additional hydrogen bonds. The two comparative structures obtained for 3 (3a – Fig. 5b, 3b – Fig. 5c) suggest that in this instance the additional coordination of water to the sulfonate-urea dimer contributes to the increased stability of the hydrogen bonded complex. This is evidenced by the reduction in hydrogen bond lengths and optimisation of hydrogen bond angles, shown in Fig. 2.
To further compare the self-associative binding modes observed with 1–7, the interior angle of the hydrogen bonded dimers and tapes was calculated from the intercepting planes of the urea/thiourea substituents, as illustrated in Fig. 5a. This angle is smallest for the dimers formed from 3 with angles of 21.20(17)° and 19.90(12)° calculated for 3a and 3b respectively. Exchanging the urea functionality for a thiourea with compounds 4 and 5 resulted in a slight increase in interior bond angle from 22.60(18)° to 29.77(10)° respectively. The increase in steric bulk with the addition of multiple CF3 functionalities for 6 and 7 was also found to increase the interior angle to 53.45(8)° and 32.6(2)° respectively. However, in this instance the interior self-association angle is greater for the urea compared to the thiourea. Compound 2, which was found to adopt the tape conformation, was also found to have the largest interior angle of 160.68(15)° with compound 1, which contains the least acidic HBD groups also exhibiting a large interior angle of 73.61(12)°. The angle between the plane of the phenyl ring and urea/thiourea groups were also compared as shown in Fig. 7. The structures which contain the urea HBD group were found to exhibit approximately planar monomeric structures, where as those containing the thiourea functionality were found to exhibit a greater twist.
Replacing the TBA counter cation of 4 with potassium and sodium, gives 8 and 9 respectively. Neither 8 nor 9 exhibit self-associative urea–anion binding modes, but instead show syn-urea–urea binding modes, as illustrated in Fig. 8. Both the sodium and potassium cations are known to strongly coordinate anions in comparison to TBA.19 This explains the switch from the urea–anion binding mode of 4 to the urea–urea binding mode observed with 8 and 9. The sulfonate group is no longer free to act as a HBA, the urea oxygen atom has now become the principle HBA in the self-association process.
Fig. 8 Ball and stick representation of the single crystal X-ray structure obtained for compound 9, exhibiting hydrogen bonded tape formation through a syn-urea–urea binding mode. Table S1† details individual hydrogen bond lengths, angles and associated errors observed in this single crystal X-ray structure. Atomic colour scheme: carbon = grey; oxygen = red; nitrogen = blue; sulfur = yellow; hydrogen = white; fluorine = green; sodium = turquoise. |
Exchanging the strongly sulfonate coordinating sodium/potassium counter cation of 8 and 9 for the less strongly sulfonate coordinating HBD pyridinium ion gives rise to 10. The counter cation acts as a competitive HBD, coordinating to the HBA sulfonate functionalities as shown in Fig. 9a. In this instance we no longer see the formation of the self-associative urea–urea binding mode as with 8 and 9 or the urea–anion dimer formation as with 4. Instead 10 adopts a similar urea–anion hydrogen bonded tape to 2, illustrated in Fig. 9b. The mean intermolecular urea–anion hydrogen bond calculated for 10 measured 154.60(29)° and 2.967(4) Å. Compound 4 was shown to have a comparative mean bond angle of 164.47(24)° and mean hydrogen bond length of 2.897(4) Å, suggesting the anion–urea hydrogen bonds formed in the self-association of 10 are comparatively weaker to those of 4. This can be attributed to the cation exchange.
Fig. 9 Ball and stick representation of the single crystal X-ray structure obtained for compound 10, exhibiting hydrogen bonded tape formation through a urea–anion binding mode; a) showing the hydrogen bonding modes produced through the additional HBD capabilities of the pyridinium counter cation; b) shows the extended hydrogen bonded tape. Table S1† details individual hydrogen bond lengths, angles and associated errors observed in this single crystal X-ray structure. Atomic colour scheme: carbon = grey; oxygen = red; nitrogen = blue; sulfur = yellow; hydrogen = white; fluorine = green. |
Fig. 11 shows that 9, adopts a similar expanded architecture to that exhibited in by compound 5, through the formation of linear hydrophobic and hydrophilic zones. The hydrophobic zones again consist of the CF3 substituted aromatic groups. The hydrophilic zones comprise of the sulfonate functionalities, sodium cations and water molecules. In this instance the presence of the urea–urea binding mode cause these hydrogen bonded tapes to running anti-parallel to one another. An analogous molecular architecture was also observed within the crystal structure of 8.
Footnotes |
† Electronic supplementary information (ESI) available: This includes experimental details and NMR and crystallography data. CCDC 1489604–1489612. For ESI and crystallographic data in CIF or other electronic format see DOI: 10.1039/c6ce01493c |
‡ X-ray data were collected on a SuperNova, Dual, Cu at zero, AtlasS2 diffractometer. CCDC numbers for the 11 single crystal structures from compounds 1–10: 1 = 1489604; 2 = 1489605; 3a = 1489606; 3b = 1453959; 4 = 1489607; 5 = 1489608; 6 = 1489609; 7 = 1489610; 8 = 1453958; 9 = 1489611; 10 = 1489612. |
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