Rashmi Gaurad,
Harveer Singh Cheemabd,
Yogesh Kumarc,
Suriya Pratap Singha,
Dharmendra K. Yadavc,
Mahendra Padurang Darokarbd,
Feroz Khancd and
Rajendra Singh Bhakuni*ad
aMedicinal Chemistry Division, CSIR-Central Institute of Medicinal and Aromatic Plants, Lucknow-226015, India. E-mail: bhakunirs2000@yahoo.com; bhakunirs2000@gmail.com; Fax: +91 5222342666; Tel: +91 5222718622
bMolecular Bio-prospection Department, CSIR-Central Institute of Medicinal and Aromatic Plants, Lucknow-226015, India
cMetabolic and Structural Biology Department, CSIR-Central Institute of Medicinal and Aromatic Plants, Lucknow-226015, India
dAcademy of Scientific and Innovative Research (AcSIR), Anusandhan Bhawan, New Delhi 110 001, India
First published on 21st May 2015
Cerebral malaria is a serious and sometimes fatal disease caused by a Plasmodium falciparum parasite that infects a female anopheles mosquito which feeds on humans. The parasites responsible for mosquito-borne infectious diseases are increasingly resistant to current drug approaches, and almost half of the world is at risk of contracting an illness. A series of twenty five new ether and ester derivatives of dihydroartemisinin (DHA) have been prepared based on in silico studies and in vitro antimalarial activity and later assessed against the chloroquine sensitive NF-54 strain of Plasmodium falciparum. In general the incorporation of nitro functionality in ester derivatives enhances the activity relative to artemisinin. Most of the ether derivatives were found to be as active as DHA, while 11-OH ether derivatives were not as active as DHA. The most potent analogue in the series was compound 21 which was several fold more active than artemisinin against P. falciparum used in the study. Molecular docking and ADMET studies were performed to explore the possible mode of interaction of active compounds in to the binding site pocket of malaria parasite target enzyme plasmepsin-II and evaluated compliance with oral bioavailability and pharmacokinetics parameters. The ester derivatives 19 and 20 were found to be twice active than DHA, having nitro functionality showing IC50 10.58 nM and 8.54 nM respectively.
000 deaths.1 Malaria is a major parasitic disease of the tropical and subtropical countries including India.1 Hence the malaria situation is getting worse with rapid spread of multidrug resistant Plasmodium falciparum. Isolation of artemisinin 1 from Artemisia annua, as the active principle of the Chinese traditional drug against malaria, is a major breakthrough in malaria chemotherapy.2–12 Artemisinin owes its antimalarial activity due to the presence of 1,2,4-trioxane system. It is active against both chloroquine-sensitive and chloroquine resistant malaria. The semisynthetic derivatives of artemisinin such as dihydroartemisinin 2, artemether 3, arteether 4, and artesunic acid 5 are more active than artemisinin and are currently used as drugs of choice for the treatment of malaria caused by multidrug-resistant P. falciparum.13,14 Therefore, there is considerable urgency to develop new classes of antimalarials. Artemisinin (1) (qinghaosu) is an unusual 1,2,4-trioxane which has been used clinically in China for the treatment of multidrug resistant P. falciparum malaria. However the clinical application of artemisinin has been limited by the drug's pharmacokinetic properties. This has provided the impetus for the investigation of derivatives of this compound, some of which include esters and ethers of the corresponding lactol, dihydroartemisinin (DHA) (2). Analogues of this type are currently being developed as potent and rapidly acting antimalarials.2 Chloroquine-resistant P. falciparum is present in most of the countries of Asia, Africa, and South America. Resistance to the sulphonamide-pyrimethamine combination is widespread in southeast Asia and South America. Field trials with mefloquine have met with rapid emergence of malarial parasites resistant to the drug.
Resistance to quinine is not common, but the duration of the treatment with the drug is long and requires hospitalization. Currently, artemisinin 1 and its derivatives dihydroartemisinin 2, artemether 3, arteether 4, and artesunic acid 5 (Fig. 1) are the only class of drugs that are effective against multidrug resistant malaria.2–11 Artesunic acid, the hemisuccinate ester of dihydroartemisinin 2, is one of the clinically useful derivative of artemisinin.15–19 Through strong worldwide programs malaria has been eradicated from many countries, resistance to current malarial drugs continues and about 600
000 people a year die from the disease, mostly children. As the disease and carrier mosquitoes build up resistances to the current drugs, researchers are looking for the individual molecules that will kill the malaria parasite to combat resistance. In continuation of our work12 to meet these objectives, we have prepared a series of novel ether and ester derivatives of dihydroartemisinin 6–18, 19–25 and 28–32.
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ethylacetate (7
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3). All the required solvents and reagents were purchased from Merck (Mumbai, India) and Sigma Aldrich., India. The compounds were visualized by either exposure of TLC plates to I2 vapors or by spraying with vanillin-sulfuricacid reagent, followed by heating at 110 °C for 15 minutes. Si-gel, 60–120 mesh (spectrochem) was used in the column chromatography for the purification of metabolites. The compounds were identified by their spectral IR, ID (1H, 13C, DEPT) NMR and ESIMS analysis.
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| Fig. 2 Extraction of artemisinin: outline of extraction protocol (see ref. 19 for details). | ||
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5) yielded an oily compound in 93% (w/w) yield. IR λmax (neat): 1254, 1171, 1103 (ether), 1527, 1343 (Ar NO2), 2875, 2925, 1029, 875 cm−1; 1H, COSY-NMR (300 MHz, CDCl3) δ 0.87 (6H, d, J = 6.0 Hz, H3-13, H3-14), 1.37 (3H, s, H3-15), 2.61 (1H, m, C-11), 4.77 (1H, d, J = 14.4 Hz, Ha-1′), 4.87 (1H, brs, αH-12), 5.18 (1H, d, J = 14.7 Hz, Hb-1′), 5.37 (1H, s, H-5), 7.37 (1H, d, J = 7.8 Hz, H-7′), 7.56 (2H, m, H-5′, H-6′), and 7.95 (1H, d, J = 8.1 Hz, H-4′); 13C, DEPT-NMR (75 MHz, CDCl3): δ 13.3 (C-13), 20.7 (C-14), 24.8 (C-8), 25.0 (C-2), 26.5 (C-15), 31.3 (C-11), 34.9 (C-9), 36.8 (C-3), 37.7 (C-10), 44.6 (C-7), 52.9 (C-1), 67.80 (C-1′), 81.4 (C-6, q), 88.4 (C-5), 102.5 (C-12), 104.5 (C-4, q), 125.1 (C-4′), 128.5 (C-7′), 129.5 (C-5′), 133.7 (C-6′), 134.7 (C-2′, q), and 148.1 (C-3′, q); ESI-MS (positive): m/z 420 [M + H]+ calcd for C22H30O7N found 420 and (negative): 418 [M − H]− calcd for C22H28O7N and found 418.
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5) yielded a colorless oil in 90% (w/w) yield. IR λmax (neat): 1195, 1102 (ether), 1531, 1349 (Ar NO2), 2925, 2874, 1034, 875 cm−1; 1H, COSY-NMR (300 MHz, CDCl3) δ 0.94 (3H, d, J = 5.7 Hz, H3-13), 0.98 (3H, d, J = 4.2 Hz, H3-14), 1.44 (3H, s, H3-15), 2.69 (1H, m, H-11), 4.62 (1H, d, J = 17.6 Hz, Ha-1′), 4.91 (1H, brs, αH-12), 4.97 (1H, d, J = 17.6 Hz, Hb-1′), 5.44 (1H, s, H-5), 7.48 (1H, dd, J = 7.5, 3.3 Hz, H-6′), 7.61 (1H, d, J = 6.9 Hz, H-7′), 8.11 (1H, d, J = 7.2 Hz, H-5′), 8.23 (1H, s, H-3′); 13C, DEPT-NMR (75 MHz, CDCl3): δ 13.4 (C-13), 20.7 (C-14), 24.9 (C-8), 25.0 (C-2), 26.5 (C-15), 31.2 (C-11), 34.9 (C-9), 36.7 (C-3), 37.8 (C-10), 44.6 (C-7), 52.91 (C-1), 68.9 (C-1′), 81.4 (C-6, q), 88.4 (C-5), 102.1 (C-12), 104.6 (C-4, q), 122.3 (C-3′), 122.8 (C-5′), 129.6 (C-6′), 133.3 (C-7′), 141.0 (C-2′, q), 148.6 (C-4′, q); ESI-MS (positive): m/z 420 [M + H]+ calcd for C22H30O7N found 420 and (negative): 418 [M − H]− calcd for C22H28O7N and found 418 and 442 [M + Na]+.
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5) yielded a colorless oil in 90% (w/w) yield. IR λmax (neat): 1278, 1098 (ether), 2939, 2875, 1481, 1378, 1012, 787 cm−1; 1H, COSY-NMR (300 MHz, acetone-d6): δ 0.92 (6H, d, J = 6.9 Hz, H3-13, H3-14), 1.32 (3H, s, H3-15), 2.56 (1H, m, H-11), 3.75, 3.79 (3H each, s, 2 × OCH3), 4.47 (1H, d, J = 12.3 Hz, Ha-1′), 4.86 (1H, d, J = 12.3 Hz, Hb-1′), 4.83 (1H, d, J = 4.5 Hz, αH-12), 5.46 (1H, s, H-5), 6.97 (1H, m, H-5′, H-6′, H-7′); 13C, DEPT-NMR (75 MHz, acetone-d6): δ 12.9 (C-13), 20.1 (C-14), 24.7 (C-8), 25.0 (C-2), 25.7 (C-15), 31.3 (C-11), 34.9 (C-9), 36.6 (C-3), 37.6 (C-10), 44.9 (C-7), 53.0 (C-1), 55.6, 60.3 (2 × OCH3), 64.8 (C-1′), 81.0 (C-6, q), 88.0 (C-5), 101.5 (C-12), 103.9 (C-4, q), 112.5 (C-5′), 121.1 (C-7′), 124.1 (C-6′), 132.4 (C-2′, q), 147.4 (C-4′, q), and 153.0 (C-3′, q); ESI-MS (positive): m/z 457 [M + Na]+, molecular formula C24H34O7.
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5) yielded a colorless oil in 90% (w/w) yield. IR λmax (neat): 1276, 1082 (ether), 2934, 2872, 1476, 1381, 1019 cm−1; 1H, COSY-NMR (300 MHz, CDCl3): δ 0.92 (3H, d, J = 6.6 Hz, H3-13), 0.96 (3H, d, J = 7.5 Hz, H3-14), 1.31 (3H, s, H3-15), 2.58 (1H, m, H-11), 3.73, 3.78 (3H each, s, 2 × OCH3), 4.41 (1H, d, J = 13.2 Hz, Ha-1′), 4.84 (1H, d, J = 2.7 Hz, αH-12), 4.86 (1H, d, J = 13.2 Hz, Hb-1′), 5.46 (1H, s, H-5), 6.78 (1H, dd, J = 8.7, 3.0 Hz, H-5′), 6.88 (1H, d, J = 8.7 Hz, H-4′), 6.97 (1H, d, J = 3.0 Hz, H-7′); 13C, DEPT-NMR (75 MHz, acetone-d6): δ 12.9 (C-13), 20.1 (C-14), 24.7 (C-8), 25.0 (C-2), 25.7 (C-15), 31.4 (C-11), 35.0 (C-9), 36.6 (C-3), 37.6 (C-10), 44.9 (C-7), 53.0 (C-1), 55.3, 55.6 (2 × OCH3), 65.0 (C-1′), 81.0 (C-6, q), 87.9 (C-5), 101.7 (C-12), 103.8 (C-4, q), 111.5 (C-5′), 112.6 (C-4′), 114.4 (C-7′), 128.4 (C-2′, q), 151.3 (C-3′, q), 154.0 (C-6′, q); ESI-MS (positive): m/z 435 [M + H]+ calcd for C24H35O7 found 435.
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5) yielded a colorless oil in 90% (w/w) yield. IR λmax (neat): 1203, 1155 (ether), 2927, 2873, 1600, 1476, 1381, 1029
875 cm−1; 1H, COSY-NMR (300 MHz, acetone-d6): δ 0.92 (3H, d, J = 6.6 Hz, H3-13), 0.96 (3H, d, J = 7.5 Hz, H3-14), 1.31 (3H, s, H3-15), 2.55 (1H, m, H-11), 3.74, 3.76 (3H each, s, 2 × OCH3), 4.44 (1H, d, J = 12.6 Hz, Ha-1′), 4.76 (1H, d, J = 12.6 Hz, Hb-1′), 4.79 (1H, d, J = 3.6 Hz, αH-12), 5.42 (1H, s, H-5), 6.38 (1H, s, H-5′), 6.53 (2H, brs, H-3′, H-7′); 13C, DEPT-NMR (75 MHz, acetone-d6): δ 13.0 (C-13), 20.1 (C-14), 22.1 (C-8), 24.8 (C-2), 25.0 (C-15), 31.3 (C-11), 34.9 (C-9), 36.6 (C-3), 37.6 (C-10), 44.8 (C-7), 53.0 (C-1), 55.0 (2 × OCH3), 69.5 (C-1′), 81.0 (C-6, q), 88.0 (C-5), 99.5 (C-5′), 101.3 (C-12), 103.9 (C-4, q), 105.2 (C-3′, C-7′), 141.5 (C-2′, q), 161.4 (C-4′, C-6′, q); ESI-MS (positive): m/z 435 [M + H]+ calcd for C24H35O7 found 435 and 457 [M + Na]+.
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5) yielded white crystals in 70% w/w yield. IR λmax (KBr): 1378, 1138 (ether), 2926, 2873, 1450, 875 cm−1; 1H NMR (300 MHz, CDCl3) δ 0.90 (6H, d, J = 6.3 Hz, H3-13, H3-14), 1.43 (3H, brs, H3-15), 2.83 (1H, m, H-11), 5.44 (1H, d, J = 7.2 Hz, βH-12), 5.54 (1H, s, H-5), 6.90 (1H, dd, J = 8.1, 8.1 Hz, H-6′), 7.08 (1H, d, J = 6.9, H-5′), 7.26 (1H, d, J = 1.8 Hz, H-3′); ESI-MS(positive): m/z 464 [M + H]+ calcd for C22H27O5NBr found 464.
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5) yielded a colorless oil, in 80% (w/t) yield. IR λmax (neat): 1371, 1132 (ether), 2870, 1456, 1592, 1102 and 753 (Cl groups) cm−1; 1H, COSY-NMR (300 MHz, CDCl3): δ 0.86 (3H, d, J = 6.0 Hz, H3-13), 0.96 (3H, d, J = 5.1 Hz, H3-14), 1.42 (3H, s, H3-15), 2.81 (1H, m, H-11), 5.45 (1H, brs, αH-12), 5.54 (1H, s, H-5), 6.92 (1H, dd, H-5′), 7.08 (1H, d, J = 8.4 Hz, H-5′), 7.30 (1H, brs, H-3′); 13C, DEPT-NMR (75 MHz, CDCl3): δ 13.4 (C-13), 20.7 (C-14), 24.6 (C-8), 25.0 (C-2), 26.4 (C-15), 31.5 (C-11), 35.0 (C-9), 36.7 (C-3), 37.8 (C-10), 44.6 (C-7), 52.9 (C-1), 81.3 (C-6, q), 88.9 (C-5), 102.4 (C-12), 104.7 (C-4, q), 114.6 (C-5′), 117.4 (C-6′), 124.7 (C-2′, q), 150.3 (C-3′), 155.9 (C-1′, q), 159.2 (C-4′, q); ESI-MS (positive): m/z 413 [M + H]+ calcd for C21H27O5ClF found 413 and 452 [M + H + K]+.
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5) yielded a colorless oil, 95% (w/w) in yield. IR λmax (neat): 3067, 3040, 1585, 1487, 1253, 1214, 1030, 875, 789, 693 (aromatics), 2873, 1448, 1377, 1140 (ether) cm−1; 1H NMR (300 MHz, CDCl3): δ 0.83 (3H, d, J = 7.2 Hz, H3-13), 0.88 (3H, d, J = 5.4 Hz, H3-14), 1.38 (3H, s, H3-15), 2.60 (1H, m, H-11), 4.44 (1H, d, J = 12.6 Hz, Ha-1′), 4.81 (1H, d, J = 12.3 Hz, Hb-1′), 4.83 (1H, d, J = 3.0, αH-12), 5.36 (1H, s, H-5), 6.91 (5H, m, H-3′, H-5′, H-7′, H-9′, H-13′), 7.04 (1H, t, J = 7.5 Hz, H-11′), 7.27 (3H, m, H-6′, H-10′, H-12′); 13C, DEPT-NMR (75 MHz, CDCl3): δ 13.4 (C-13), 20.7 (C-14), 24.8 (C-8), 25.0 (C-2), 26.5 (C-15), 31.3 (C-11), 35.0 (C-9), 36.8 (C-3), 37.7 (C-10), 44.8 (C-7), 52.9 (C-1), 69.6 (C-1′), 81.4 (C-6, q), 88.4 (C-5), 101.8 (C-12), 104.5 (C-4, q), 117.4 (C-3′), 118.0 (C-5′), 119.5 (C-9′, C-13′), 122.0 (C-10′, C-12′), 123.7 (C-11′), 129.9 (C-7′), 130.1 (C-6′) 140.9 (C-2′, q) 157.4 (C-4′, q), 157.9 (C-8′, q); ESI-MS (positive): m/z 467 [M + H]+ calcd for C28H35O6 found 467 and (negative): 465 [M − H]− calcd for C28H33O6 found 465.
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5) yielded a colorless oil, 90% (w/w) in yield. IR λmax (neat): 1655 (double bond), 1377, 1007 (ether), 2922, 2874, 1450, cm−1; 1H, COSY-NMR (400 MHz, acetone-d6): δ 0.89 (3H, d, J = 7.4 Hz, H3-13), 0.94 (3H, d, J = 8.0 Hz, H3-14), 1.32 (3H, s, H3-15), 1.69, 1.74 (3H each, s, H3-4′, H3-5′), 3.63 (1H, m, Ha-1′), 4.20 (1H, m, Hb-1′), 4.71 (1H, d, J = 3.4 Hz, αH-12), 5.31 (1H, t, J = 4.5 Hz, H-2′), 5.37 (1H, s, H-5); 13C, DEPT-NMR (100 MHz, acetone-d6): δ 12.5 (C-13), 17.3, 24.3 (C-4′, C-5′), 19.8 (C-14), 24.6 (C-2), 24.9 (C-8), 25.3 (C-15), 30.8 (C-11), 34.6 (C-9), 36.3 (C-3), 37.2 (C-10), 44.5 (C-7), 52.6 (C-1), 63.9 (C-1′), 80.6 (C-6, q), 87.5 (C-5), 100.5 (C-12), 103.4 (C-4, q), 121.3 (C-2′), 135.8 (C-3′, q); ESI-MS (positive): m/z 353 [M + H]+ calcd for C20H30O5 found 353; 375 [M + Na]+.
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5) yielded a colorless oil, 90% (w/w) yield. IR νmax (neat): IR λmax (neat): 1377, 1007 (ether) 714, 725 (long chain), 2922, 2874, 1450 cm−1; 1H NMR (300 MHz, acetone-d6): δ 0.91 (3H, d, J = 7.2 Hz, H3-13), 0.93 (3H, t, J = 6.9 Hz, H3-17′), 0.97 (3H, d, J = 5.7 Hz, H3-14), 1.27 (28H, brs, H2-2′-H2-16′), (3H, s, H3-15), 3.37 (1H, m, Ha-1′), 4.79 (1H, m, Hb-1′), 4.80 (1H, d, J = 2.4 Hz, αH-12), 5.35 (1H, s, H-5); 13C, DEPT-NMR (300 MHz, acetone-d6): δ 13.4, 14.5 (C-13, C-18′), 20.7 (C-14), 23.0 (C-8), 25.1 (C-2), 26.6 (C-15), 24.4, 29.7, 30.11, 32.3 (C-2′ to C-17′), 31.3 (C-11), 35.1 (C-9), 36.8 (C-3), 37.8 (C-10), 44.9 (C-7), 53.0 (C-1), 68.8 (C-1′), 81.5 (C-6, q), 88.3 (C-5), 102.3 (C-12), 104.4 (C-4, q); ESI-MS (positive): m/z 537 [M + H]+ calcd for C33H62O5 found 537.
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5) yielded a white solid, 71% (w/w) yield. IR λmax (KBr): 3178, 2923, 1410 cm−1; 1H, COSY-NMR (300 MHz, CDCl3): δ 0.90 (3H, m, H3-14), 1.13 (3H, d, J = 5.1 Hz, H3-13), 1.38 (3H, s, H3-15), 1.66 (4H, brs, H2-9′, H2-10′), 1.92 (1H, m, H-8′), 1.99 (8H, brs, H2-2′, H2-4′, H2-6′, H2-7′), 2.27 (1H, t, J = 13.65 Hz, H-3′, H-5′), 5.42 (1H, s, H-5), 5.44 (1H d, J = 11.1 Hz, βH-12); 13C, DEPT-NMR (75 MHz, CDCl3): δ 20.2 (C-14), 21.7 (C-13), 25.2 (C-2, C-8), 26.0 (C-15), 30.2 (C-11, C-3′, C-5′), 32.0 (C-9′), 34.5 (C-9), 36.7 (C-4′, C-10′), 36.9 (C-3), 37.7 (C-10), 41.4 (C-8′), 44.4 (C-2′, C-6′), 44.5 (C-7′), 46.5 (C-1′), q 47.9 (C-7), 51.7 (C-1), 78.8 (C-5), 82.5 (C-6, q), 91.4 (C-12), 102.6 (C-4, q); ESI-MS (positive): m/z 435 [M + H]+ calcd for C25H39O4S found 435 m/z; 457 [M + Na]+, 501 [M + K]+.
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10) yielded a viscous compound, 51% (w/w) yield. IR λmax (neat): 689 (C–S-linkage), 2927, 2872, 1453, 1377, 1129, 1038, 788 cm−1; 1H NMR (400 MHz, CDCl3): δ 0.93 (3H, d, J = 5.4 Hz, H3-13), 0.97 (3H, d, J = 4.5 Hz, H3-14), 1.33 (3H, s, H3-15), 1.73 (4H, m, H2-2′, H2-3′), 2.70 (2H, m, H2-4′), 2.93 (1H, m, H2-1′), 4.67 (1H, d, J = 7.86 Hz, βH-12a), 5.26 (1H, d, J = 3.87 Hz, SH), 5.56 (1H, s, H-5); 13C, DEPT-NMR (100 MHz, CDCl3): δ 15.1 (C-13), 20.6 (C-14), 25.1 (C-8), 25.4 (C-2), 26.2 (C-15), 32.9 (C-11), 35.1 (C-9), 37.1 (C-3), 37.8 (C-10), 46.0 (C-7), 53.6 (C-1), 81.1 (C-6, q), 88.5 (C-5), 92.8 (C-12), 104.5 (C-4, q); ESI-MS (positive): m/z 389 [M + H]+ calcd for C19H33O4S2 found 389; m/z 411 [M + Na]+.
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8) yielded a viscous compound, 36% (w/w) yield. IR λmax (KBr): 690 (C–S-linkage), 2926, 2871, 1451, 1377, 1129, 1037 cm−1; 1H NMR (400 MHz, CDCl3): δ 0.92 (6H, d, J = 7.2 Hz, H3-13a, H3-13b), 0.97 (6H, m, H3-14a, H3-14b), 1.32 (6H, s, H3-15a, H3-15b), 1.73 (4H, m, H2-2′, H2-3′), 2.62 (4H, m, H2-1′, H2-4′), 4.60 (1H, d, J = 8.02 Hz, βH-12a), 4.75 (1H, d, J = 8.22 Hz, βH-12b), 5.37 (1H, s, H-5a), 5.98 (1H, s, H-5b); 13C NMR (100 MHz, CDCl3): δ 14.8, 15.3 (C-13a, 13b), 20.5, 20.7 (C-14a, 14b), 22.3 (C-8a, 8b), 24.4 (C-2a, 2b), 25.5, 26.1 (C-15a, 15b), 28.1 (C-2′), 31.2 (C-11a, 11b), 32.8 (C-3′), 33.7, 33.8 (C-1′, C-4′), 34.9, 35.3 (C-9a, 9b), 36.1 (C-3a, C-3b), 36.9, 37.8 (C-10a, 10b), 47.0, 49.1 (C-7a, 7b), 52.7, 56.0 (C-1a, 1b), 80.6, 81.1 (C-6a, 6b, q), 83.5 (C-5a, 5b), 92.7, 93.3 (C-12a, 12b), 104.4 (C-4a, 4b, q); ESI-MS (positive): m/z 655 [M + H]+ calcd for C34H55O8S2 found 655; 677 [M + Na]+, 693 [M + K]+.
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5) yielded a colorless oil, 90% (w/w) yield. IR λmax (neat): 3087, 1439, 1261, 1040, 858, 719 (aromatics), 1732 (ester CO), 1538, 1556 (Ar NO2) cm−1; 1H NMR (300 MHz, CDCl3): δ 0.93 (3H, d, J = 7.2 Hz, H3-13), 0.97 (3H, d, J = 5.7 Hz, H3-14), 1.41 (3H, s, H3-15), 2.80 (1H, m, H-11), 5.52 (1H, s, H-5), 6.01 (1H, d, J = 9.9 Hz, βH-12), 7.66 (1H, m, H-6′), 8.42 (2H, d, J = 8.4 Hz, H-5′, H-7′), 8.91 (1H, s, H-3′); 13C, DEPT-NMR (70 MHz, CDCl3): δ 12.2 (C-13), 20.1 (C-14), 22.0 (C-8), 24.5 (C-2), 25.8 (C-15), 31.8 (C-11), 34.0 (C-9), 36.1 (C-3), 37.2 (C-10), 45.2 (C-7), 51.5 (C-1), 80.0 (C-6, q), 91.6 (C-5), 93.3 (C-12), 104.5 (C-4, q), 124.9 (C-3′), 127.7 (C-5′), 129.6 (C-6′), 131.3 (C-2′, q), 135.6 (C-7′), 148.2 (C-2′, q), 163.2 (C-1′, q); EI-MS (positive): m/z 434 [M + H]+ calcd for C22H28O8N found 434; 456 [M + Na]+, 472 [M + K]+.
:
5) yielded an oily compound in 95% (w/w) yield. IR λmax (neat): 3081, 1437, 1256, 1034, 851, 711 (aromatics), 1734 (ester CO), 1533, 1558 (Ar NO2) cm−1; 1H NMR (300 MHz, CDCl3): δ 0.92 (6H, m, H3-13, H3-14), 1.41 (3H, s, H3-15), 2.75 (1H, m, H-11), 5.52 (1H, s, H-5), 6.01 (1H, d, J = 9.0 Hz, βH-12), 8.27 (4H, brs, H-3′, H-4′, H-6′, H-7′); 13C, DEPT-NMR (70 MHz, CDCl3): δ 12.62 (C-13), 20.60 (C-14), 22.42, (C-8), 24.96 (C-2), 26.2 (C-15), 32.3 (C-11), 34.4 (C-9), 36.6 (C-3), 37.6 (C-10), 45.6 (C-7), 51.9 (C-1), 81.5 (C-6, q), 92.0 (C-5), 93.7 (C-12), 104.9 (C-4, q), 123.9 (C-4′, C-6′), 131.6 (C-3′, C-7′), 135.4 (C-2′, q), 151.1 (C-5′, q), 163.9 (C-1′, q); EI-MS (positive): m/z 434 [M + H]+ calcd for C22H28O8N found 434; 456 [M + Na]+.
:
5) yielded an oily compound, 90% (w/w) yield. IR λmax (neat): 1626, 1508, 1444, 1260, 1017, 878, 861 (aromatics), 1734 (ester CO), 921 (–O–CH2–O– group) cm−1; 1H NMR (300 MHz, CDCl3): δ 0.89 (3H, d, J = 7.2 Hz, H3-13), 0.96 (3H, d, J = 5.7 Hz, H3-14), 1.41 (3H, s, H3-15), 2.70 (1H, m, H-11), 5.50 (1H, s, H-5), 5.94 (1H, d, J = 9.9 Hz, βH-12), 6.03 (2H, s, H-8′), 6.83 (1H, d, J = 7.8 Hz, H-6′), 7.53 (1H, s, H-3′), 7.73 (1H, d, J = 7.8 Hz, H-7′); 13C, DEPT-NMR (70 MHz, CDCl3) = 12.1 (C-13), 20.1 (C-14), 21.9 (C-8), 24.5 (C-2), 25.8 (C-15), 31.9 (C-11), 34.0 (C-9), 36.2 (C-3), 37.2 (C-10), 45.2 (C-7), 51.5 (C-1), 80.1 (C-6, q), 91.5 (C-5), 92.4 (C-12), 101.8 (C-8′), 104.3 (C-4, q), 107.8 (C-6′), 109.8 (C-7′), 123.4 (C-2′, q), 126.0 (C-3′), 147.6 (C-4′, q), 151.9 (C-5′, q), 164.5 (C-1′, q); ESI-MS (positive): m/z 455 [M + Na]+ calcd for C23H28O8Na found 455 m/z.
:
5) yielded orange crystals of compound 24, 85% (w/w) yield, mp 138–140 °C. IR λmax (KBr): 2344 (–N
N– group), 1654, 1508, 1458, 1271, 1028, 882, 864, 783 (aromatics), 1732 (ester CO) cm−1; 1H NMR (300 MHz, CDCl3): δ 0.92 (3H, d, J = 8.1 Hz, H3-13), 0.98 (3H, d, J = 6.0 Hz, H3-14), 1.49 (3H, s, H3-15), 2.79 (1H, m, H-11), 5.54 (1H, brs, H-5), 6.02 (1H, d, J = 9.9 Hz, βH-12), 7.53 (3H, m, H-10′, H-11′, H-12′), 7.95 (4H, d, J = 8.7 Hz, H-4′, H-6′, H-9′, H-13′), 8.27 (2H, d, J = 8.7 Hz, H-3′, H-7′); 13C, DEPT-NMR (75 MHz, CDCl3): δ 12.6 (C-13), 20.6 (C-14), 22.4 (C-8), 25.0 (C-2), 26.3 (C-15), 32.4 (C-11), 34.5 (C-9), 36.6 (C-3), 37.6 (C-10), 45.7 (C-7), 52.0 (C-1), 80.6 (C-6), 92.0 (C-5), 93.2 (C-12), 104.8 (C-4, q), 122.9 (C-4′, C-6′), 123.5 (C-9′, C-13′), 129.5 (C-10′, C-12′), 131.5 (C-3′, C-7′), 132.1 (C-11′), 152.9 (C-8′, q), 155.7 (C-5′, q), 165.1 (C-1′, q); ESI-MS (positive): m/z 493 [M + H]+ calcd for C28H33O6N2 found 493.
:
5) yielded a colorless oil, 90% (w/w) in yield. IR λmax (neat): 1736 (ester CO), 714, 725 (long chain), 2922, 2874, 1450, 1377, 1007 cm−1; 1H, COSY-NMR (300 MHz, CDCl3): δ 0.78 (3H, t, J = 7.2, H3-12′), 0.79 (3H, d, J = 7.2 Hz, H3-13), 0.89 (3H, d, J = 5.4 Hz, H3-14), 1.18 (18H, m, H2-3′–H2-11′), 1.36 (3H, s, H3-15), 2.31 (2H, t, J = 7.2, H2-2′), 2.48 (1H, m, H-11), 5.37 (1H, s, H-5), 5.72 (1H, d, J = 9.6 Hz, βH-12); 13C, DEPT-NMR (75 MHz, CDCl3): δ 12.4 (C-12′), 14.4 (C-13), 20.6 (C-14), 22.4 (C-8), 23.0 (C-2), 24.9, 25.0, 29.4, 29.6, 29.7, 29.8, 29.9, 30.0, 32.2, 34.7 (C-2′ to C-11′, C-8), 26.3 (C-15), 32.2 (C-11), 34.5 (C-9), 36.6 (C-3), 37.6 (C-10), 45.6 (C-7), 52.0 (C-1), 80.5 (C-6, q), 91.8 (C-5), 92.0 (C-12), 104.8 (C-4, q), 172.9 (C-1′, q); ESI-MS (positive): m/z 467 [M + H]+ calcd for C27H47O6 found 467; 489 [M + Na]+ (negative): 465 [M − H]−.
:
5) yielded a colorless oil, 90% (w/w) in yield. IR λmax (neat): 1751 (ester CO), 722 (long chain), 2924, 2853, 1459, 1376, 1037 cm−1; 1H, COSY-NMR (300 MHz, CDCl3): δ 0.93 (6H, m, H3-13, H3-16′), 0.97 (3H, d, J = 4.2 Hz, H3-14), 1.23 (26H, m, H2-3′–H2-15′), 1.41 (3H, s, H3-15), 2.34 (2H, t, J = 8.4, H2-2′), 2.54 (1H, m, H-11), 5.42 (1H, s, H-5), 5.77 (1H, d, J = 9.9 Hz, βH-12); 13C, DEPT-NMR (75 MHz, CDCl3); δ 12.5 (C-16′), 14.5 (C-13), 20.6 (C-14), 22.4 (C-8), 23.0 (C-2), 24.9, 25.0, 29.4, 29.6, 29.7, 29.8, 29.9 (12 × CH2), 26.3 (C-15), 32.2 (C-11), 30.0, 34.7 (2 × CH2), 34.7 (C-9), (C-2′), 36.6 (C-3), 37.6 (C-10), 44.6 (C-7), 52.0 (C-1), 80.5 (C-6, q), 91.8 (C-5), 92.0 (C-12), 104.8 (C-4, q), 172.9 (C-1′, q); ESI-MS (positive): m/z 561 [M + K]+ calcd for C31H54O6K found 561.
:
5) yielded creamish crystals of compound 27, 85% (w/w) yield, mp 140 °C IR λmax (KBr): 3145, 1509, 876 (furan moiety), 1739 (ester CO), 2926, 1306, 1164, 1036 cm−1; 1H NMR (300 MHz, CDCl3): δ 0.86 (3H, d, J = 6.9 Hz, H3-13), 0.95 (3H, d, J = 5.4 Hz, H3-14), 1.31 (3H, s, H3-15), 2.65 (1H, s, H-11), 5.47 (1H, s, H-5), 5.91 (1H, d, J = 9.6 Hz, βH-12), 6.77 (1H, s, H-5′), 7.41 (1H, s, H-4′), 8.08 (1H, s, H-3′); 13C, DEPT-NMR (75 MHz, CDCl3): δ 12.5 (C-13), 20.6 (C-14), 22.4 (C-8), 24.9 (C-2), 26.3 (C-15), 32.3 (C-11), 34.4 (C-9), 36.6 (C-3), 37.6 (C-10), 45.6 (C-7), 52.0 (C-1), 80.5 (C-6, q), 91.9 (C-5), 92.4 (C-12), 104.8 (C-4, q), 110.3 (C-5′), 119.2 (C-2′, q), 144.1 (C-4′), 148.9 (C-3′), 162.1 (C-1′, q); ESI-MS (positive): m/z 417 [M + K]+ calcd for C20H26O7K found 417; (negative): m/z 377 [M − H].
:
10) yielded a white solid in 85% (w/w) yield. IR λmax (KBr): 3423 (OH), 1103, 1029 (ether linkage), 1655 (double bond), 2923, 2853, 1463, 1376, 877 cm−1. 1H, COSY-NMR (400 MHz, acetone-d6): δ 0.96 (3H, d, J = 4.76 Hz, H3-14), 1.34 (3H, s, H3-15), 1.47 (3H, s, H3-13), 4.08 (1H, dd, J = 12.62, 4.94 Hz, Ha-1′), 4.32 (d, J = 10.12 Hz, Hb-1′), 4.60 (1H, brs, αH-12), 5.18 (1H, d, J = 10.44 Hz, Ha-3′), 5.33 (1H, d, J = 17.16 Hz, Hb-3′), 5.42 (1H, s, H-5), 5.99 (1H, m, H-2′); 13C, DEPT-NMR (100 MHz, acetone-d6): δ 19.7 (C-14), 24.3 (C-2, C-8), 25.0 (C-15), 28.3 (C-13), 34.2 (C-9), 36.2 (C-3), 37.2 (C-10), 50.4 (C-7), 52.7 (C-1), 68.9 (C-1′), 70.0 (C-11, q), 82.6 (C-6, q), 87.4 (C-5), 103.0 (C-12), 104.3 (C-4, q), 116.9 (C-3′), 135.5 (C-2′); ESI-MS (positive): m/z 341 [M + H]+ calcd for C18H29O6 found 341; (negative): 339 [M − H]−.
:
10) yielded a white solid, 78% (w/w) yield. IR λmax (KBr): 3363 (OH), 1272, 1103, (ether linkage), 2921, 2863, 1469, 1378 cm−1; 1H NMR (300 MHz, CDCl3): δ 0.25/0.53 (2H each, m, H2-3′/H2-4′), 0.97 (3H, brs, H3-14), 1.43 (3H, s, H3-15), 1.56 (3H, s, H3-13), 2.36 (1H, m, H-2′), 3.43 (1H, m, Ha-1′), 3.60 (1H, m, Hb-1′), 4.67 (1H, d, J = 2.1 Hz, αH-12), 5.42 (1H, s, H-5); 13C, DEPT-NMR (75 MHz, CDCl3): δ 3.1/3.6 (C-3′, C-4′), 10.9 (C-2′), 20.6 (C-14), 24.7 (C-2, C-8), 26.2 (C-15), 28.3 (C-13), 34.5 (C-9), 36.8 (C-3), 37.9 (C-10), 50.6 (C-7), 53.0 (C-1), 69.9 (C-1′), 74.0 (C-11, q), 82.3 (C-6, Q), 88.2 (C-5), 103.6 (C-12), 104.3 (C-4, q); ESI-MS (positive): m/z 355 [M + H]+ calcd for C19H31O6 found 355; (negative): 353 [M − H]−.
:
10) yielded a white solid, 80% (w/w) yield. IR λmax (KBr): 3448 (OH), 1301, 1141, 1091, 1010 (ether linkage), 2857, 3178, 2923, 1410 cm−1; 1H, COSY-NMR (300 MHz, CDCl3): δ 0.95 (3H, d, J = 5.1 Hz, H3-14), 1.45 (3H, s, H3-15), 1.51 (7H, brs, H3-13, H2-11′, H2-12′), 1.63 (10H, m, H2-4′, H2-6′, H-7′, H2-8′, H2-9′, H-10′) 1.87 (2H, t, J = 18.9 Hz, H2-2′), 2.35 (1H, t, J = 13.95 Hz, H-5′), 3.51 (1H, m, Ha-1′), 3.96 (1H, m, Hb-1′), 4.65 (1H, brs, αH-12), 5.40 (1H, s, H-5); 13C, DEPT-NMR (75 MHz, CDCl3): δ 20.6 (C-14), 24.6 (C-8), 24.8 (C-2), 26.2 (C-15), 28.3 (C-13), 29.0 (C-5′, C-7′), 32.3 (C-3′, q), 34.5 (C-9), 36.8 (C-3), 37.4 (C-6′, C-11′, C-12′), 37.8 (C-10), 43.1 (C-2′, C-4′, C-8′, C-9′), 44.0 (C-10′), 50.5 (C-7), 53.0 (C-1), 65.6 (C-1′), 70.0 (C-11, q), 82.3 (C-6, q), 88.2 (C-5), 104.1 (C-12), 104.4 (C-4, q); ESI-MS (positive): m/z 485 [M + Na]+ calcd for C27H42O6Na found 485.
:
10) yielded a white solid, 88% (w/w) yield. IR λmax (KBr): 3405 (OH), 1276, 1119, (ether linkage), 1652 (double bond), 2855, 1603, 1508, 1444, 1260, 1017, 878, 861 (aromatics) cm−1; 1H NMR (300 MHz, CDCl3): δ 0.96 (3H, d, J = 6.0 Hz, H3-14), 1.40 (3H, s, H3-15), 1.58 (3H, s, H3-13), 4.28 (1H, t, J = 6.0 Hz Ha-1′), 4.53 (1H, m, Hb-1′), 4.82 (1H, brs, αH-12), 5.47 (1H, brs, H-5), 6.30 (1H, m, H-2′), 6.64 (1H, m, H-3′), 7.40 (5H, m, H-5′, H-6′, H-7′, H-8′, H-9′); 13C, DEPT-NMR (75 MHz, CDCl3); δ 20.6 (C-14), 24.7 (C-2, C-8), 26.2 (C-15), 28.4 (C-13), 34.5 (C-9), 36.8 (C-3), 37.8 (C-10), 50.5 (C-7), 53.0 (C-1), 69.6 (C-1′), 70.0 (C-11, q), 82.3 (C-6, q), 88.3 (C-5), 103.2 (C-12), 104.4 (C-4, q), 125.2 (C-2′), 127.0 (C-6′, C-8′), 127.8 (C-7′), 128.3 (C-5′, C-9′), 133.7 (C-3′), 137.08 (C-4′, q); ESI-MS (positive): m/z 417 [M + H]+ calcd for C24H33O6 found 417.
:
10) yielded an oily compound, 90% (w/w) yield. IR λmax (neat): 3398 (OH), 1121, 1031 (ether linkage), 1606, 1514, 1432, 1256, 1011, 871 (aromatics), 914 (–O–CH2–O– group) cm−1; 1H NMR (300 MHz, CDCl3): δ 0.93 (3H, d, J = 5.4 Hz, H3-14), 1.44 (3H, s, H3-15), 1.55 (3H, s, H3-13), 4.45 (1H, d, J = 11.4 Hz, Ha-1′), 4.75 (1H, d, J = 11.4 Hz, Hb-1′), 4.78 (1H, brs, αH-12), 5.45 (1H, brs, H-5), 5.95 (2H, s, H-8′), 6.78 (3H, m, H-3′, H-4′, H-5′); 13C, DEPT-NMR (70 MHz, CDCl3): δ 20.6 (C-14), 24.7 (C-2, C-8), 26.2 (C-15), 28.4 (C-13), 34.4 (C-9), 36.8 (C-3), 37.8 (C-10), 50.5 (C-7), 52.9 (C-1), 70.0 (C-11, q), 70.8 (C-1′), 82.3 (C-6, q), 88.3 (C-5), 101.5 (C-8′), 103.0 (C-12), 104.4 (C-4, q), 108.6 (C-5′), 109.0 (C-3′), 122.1 (C-4′), 131.2 (C-2′, q), 148.2 (C-7′), 148.2 (C-6′); ESI-MS (positive): m/z 435 [M + H]+ calcd for C23H31O8 found 435.
:
10) yielded a colourless oil in 90% (w/w) yield. IR λmax (neat): 3408 (OH), 1102, 1038 (ether linkage), 1606, 1501, 1432, 1262, 1011, 874, 864 (aromatics) cm−1; 1H NMR (300 MHz, CDCl3): δ 0.94 (3H, m, H3-14), 1.47 (3H, s, H3-15), 1.56 (3H, s, H3-13), 3.77, 3.79 (3H each, s, 2 × OCH3), 4.53 (1H, d, J = 11.4 Hz, Ha-1′), 4.80 (1H, brs, αH-12), 4.92 (1H, d, J = 11.4 Hz, Hb-1′), 5.55 (1H, s, H-5), 6.69 (2H, dd, J = 6.9, 3.0 Hz, H-4′, H-5′), 6.86 (1H, s, H-7′); 13C, DEPT-NMR (75 MHz, acetone-d6): δ 20.1 (C-14), 24.6 (C-8), 24.8 (C-2), 26.2 (C-15), 28.3 (C-13), 34.5 (C-9), 36.8 (C-3), 37.8 (C-10), 50.5 (C-7), 53.0 (C-1), 56.1 (2 × OCH3), 67.6 (C-1′), 69.9 (C-11, q), 82.4 (C-6, q), 88.3 (C-5), 104.1 (C-12), 104.4 (C-4, q), 111.5 (C-5′), 112.6 (C-4′), 114.4 (C-7′), 128.12 (C-2′, q), 152.2 (C-3, q′), 153.7 (C-6′, q); ESI-MS (positive): m/z 451 [M + H]+ calcd for C24H35O8 found 451; 473 [M + Na]+.
Derivatives 28–32 were synthesized by dissolving anhydrodihydroartemisinin (200 mg) in CH2Cl2 (15 mL) and m-chloroperbenzoic acid (190 mg in 0.5 N NaHCO3) was added. The reaction mixture was vigorously stirred at room temp. for 75 min. Further epoxide 27 was hydrolysed by using BF3·OEt2 in CH2Cl2 in the presence of appropriate alcohols which resulted in the products 28–32.26 The configuration at C-12 stereocenter is assigned based on the vicinal coupling constant JH-9:H-10. A large coupling constant (7–10 Hz) is generally found for the 10α-isomer, indicating the relative trans-configuration. The 10β-isomer, indicating cis-configuration at C-10, on the other hand, has a smaller coupling constant (2–5 Hz).26
Artemisinin derivatives such as artemether 3, arteether 4, and artesunic acid 5 have excellent antimalarial activity when given by systemic routes. They are fast acting drugs and are increasingly being used for the treatment of complicated cases of malaria caused by multidrug-resistant P. falciparum. These drugs, however, have serious limitation such as short half-life and poor bioavailability when given by oral route.27 Both the short half-life and poor oral bioavailability are believed to be due to the poor stability of C10–O linkage which is prone to acid hydrolysis and P450-catalyzed oxidation.28 Since C-10 acetal derivatives are unstable, several workers have in recent past prepared C10–C linked derivatives which are more stable and have shown improved antimalarial activity by oral route.29–33 In a parallel program on synthetic antimalarial 1,2,4-trioxanes, we had observed that incorporation of particular functionality enhances the activity relative to artemisinin.34 Also there are several reports in the literature, ether and ester derivatives show promising biological activities35 On the basis of these considerations, we have prepared ether derivatives 6–18 and ester derivatives 19–25 and 11-hydroxy ether derivatives of artemisinin 28–32 and compared their biological activity against P. falciparum.
Among ether derivatives 6, 8, 13, 14 and 16 displayed better activity than arteether, and 16 was most active with IC50 9.21 nM. Except 7 and 15 having nitro group functionality at meta position and long chain ether group respectively all the derivatives were better than artemisinin. Thus, against NF54 strain, the esters were found still more active than the ethers. All esters were distinctively the most active of all artemisinin derivatives synthesized during this study. They were significantly more potent than arteether and artemisinin. As the lipophilicity of the compound increased, there was an increase in activity.36,37 This increase in activity is in accordance with earlier observations16 that lipophilic derivatives are more active than their more polar counterparts; i.e. esters and ethers are more active than the corresponding alcohols. Decrease in lipophilicity decreases activity. In the 11-OH-12-ether series, none of the derivatives were as active as artemisinin.
When we compared how the binding site pocket residues of plasmepsins interacted with the artemisinin derivatives, we found that compounds 19, 20 and 21 showed interaction with specific amino acid residues thus lead to more stability and potency in these cases and also showed the hydrogen (H–) bond formation between the ligand and receptor (Table 4). During docking, compounds 19, 20 and 21 showed quiet lower binding energy (i.e., higher binding affinity) in compare to reference drugs DHA (binding energy −6.9 kcal mol−1) (Fig. 6b) and artemisinin (binding energy −6.8 kcal mol−1) (Fig. 6c). The docking results for the active artemisinin derivatives namely, compounds 19, 20 and 21, docked on plasmepsin enzyme of P. falciparum with high docking score (i.e., low docking binding energy) of −8.0 kcal mol−1 (Fig. 6d), −7.6 kcal mol−1 (Fig. 6e) and −8.2 kcal mol−1 (Fig. 6f), respectively. For compound 19, docking result showed formation of H-bond with binding site polar basic residue HIS-164 having bond length of 2.19 Å. Likewise compound 20, also showed H-bond formation with same polar basic residue histidine (HIS-164) having bond length of 1.99 Å. Similarly, compound 21, showed H-bond formation with chemically similar family i.e., polar basic amino acid residue arginine (ARG-307) having bond length of 2.37 Å. Compound 21 seems best docked artemisinin derivative even potent then DHA and artemisinin. During docking against plasmepsin II, results showed similar binding site residues for most favourable conformations of predicted active artemisinin derivatives as well as for DHA and artemisinin (Table 4).
| Compound | AutoDock-Vina binding affinity energy/docking score (kcal mol−1) | Amino acid residues of binding site pocket (with in 4 Å region of bound compound) | H-bond forming amino acid residue & its position | Number of H-bond | Length of H-bond (Å) |
|---|---|---|---|---|---|
| 19 | −8.0 | LYS-326, ALA-325, LYS-308, ARG-307, TYR-272, GLU-271, LEU-274, HIS-276, ASN-13, VAL-160, LYS-163, HIS-164, LYS327 | HIS-164 | 1 | 2.19 |
| 20 | −7.6 | ASN-13, HIS-161, LYS-163, VAL-160, GLU-271, LYS-327, HIS-164, ALA-325, LYS-308, TYR-272, ARG-307, ASP-162 | HIS-164 | 1 | 1.99 |
| 21 | −8.2 | GLN-275, HIS-276, ASN-13, PRO-304, ARG-307, TYR-272, GLU-271, VAL-160, LEU-274 | ARG-307 | 1 | 2.37 |
| DHA (control) | −6.9 | LYS-265, LYS-308, THR-183, PRO-181, ALA-323, GLU-179, TYR-266, LEU-324, GLY-180, TYR-309 | TYR-309 | 1 | 1.79 |
| Artemisinin (control) | −6.8 | LYS-265, LYS-308, THR-183, PRO-181, ALA-323, GLU-179, TYR-266, LEU-324, GLY-180, TYR-309 | TYR-309, LEU-324 | 2 | 2.09, 2.16 |
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| Fig. 6 Revealing binding site molecular interactions and involved amino acid residues of malaria parasite P. falciparum target hydrolase enzyme plasmepsin-II (PDB ID: 2IGY) through in silico docking experiments. (a) Re-docking of co-crystallized inhibitor A2T (N-[1-(3-methylbutyl)piperidin-4-yl]-N-{4-[methyl(pyridin-4-yl)amino]benzyl}-4-pentylbenzamide) on P. falciparum enzyme plasmepsin-II (PDB: 2IGY) with binding energy −8.1 kcal mol−1 and H-bond of 3.00 Å with polar, uncharged residue serine (SER-218), and revealing similar structural superimposition of docked and co-crystallized plasmepsin-II inhibitor A2T conformations through AutoDock Vina v0.8 in PyRx virtual screening tool. (b) DHA showed a H-bond of 1.79 Å with polar uncharged residue tyrosine (TYR-309), having docking binding energy −6.9 kcal mol−1, (c) artemisinin showed two H-bonds of 2.09 Å and 2.16 Å with polar uncharged residue tyrosine (TYR-309) and non-polar hydrophobic residue leucine (LEU-324) respective, having docking binding energy −6.8 kcal mol−1, (d) compound 19 showed docking binding energy score −8.0 kcal mol−1 and revealed a H-bond of 2.19 Å with polar basic residue histidine (HIS-164), (e) compound 20 showed docking binding energy score −7.6 kcal mol−1 and revealed a H-bond of 1.99 Å with polar basic residue histidine (HIS-164), similar to compound 19, and (f) compound 21 showed docking binding energy score −8.2 kcal mol−1 and revealed a H-bond of 2.37 Å with polar basic residue arginine (ARG-307). | ||
P, therefore reflect moderate intestinal absorption and very low or no blood–brain barrier penetration. Compound 21 showed comparatively low PSA and log
P, therefore reflect good intestinal absorption and medium blood–brain barrier penetration, similar to DHA & artemisinin. However, compounds 19, 20 and 21 showed no or very low aqueous solubility, while DHA and artemisinin comparatively showed higher but low aqueous solubility (calculated for water at 25 °C). All derivatives showed poorly bound property while evaluating plasma-protein binding prediction, similar to reference drugs DHA and artemisinin. Besides, artemisinin derivatives were found to be non-inhibitors of cytochrome P450 2D6, similar to reference drugs DHA and artemisinin, thus may not metabolized frequently. The CYP2D6 enzyme is one of the important enzyme involved in drug metabolism (Table 6).
| Compound | Molecular weight (≤500) | log P (≤5) |
H-bond donors (≤5) | H-bond acceptors (≤10) | Rule of 5 violations (≤1) |
|---|---|---|---|---|---|
| 19 | 434.46 | 3.455 | 1 | 8 | 0 |
| 20 | 434.46 | 3.455 | 1 | 8 | 0 |
| 21 | 432.46 | 3.432 | 0 | 8 | 0 |
| DHA | 284.348 | 1.621 | 1 | 5 | 0 |
| Artemisinin | 282.332 | 1.998 | 0 | 5 | 0 |
| Compound | Aqueous solubility level | Blood-brain barrier (BBB) penetration level | Cytochrome (CYP-2D6) binding | Hepato-toxicity | Intestinal absorption level | Plasma-protein binding (PPB) prediction | A log P98 |
PSA_2D |
|---|---|---|---|---|---|---|---|---|
a A log P, the logarithm of the partition coefficient between n-octanol and water; PSA, polar surface area. |
||||||||
| 19 | 1 (no, very low, but possible) | 4 (no, very low penetrant) | False (non inhibitor) | False (non toxic) | 1 (moderate) | False (poorly bounded) | 5.211 | 99.756 |
| 20 | 1 (no, very low, but possible) | 4 (no, very low penetrant) | False (non inhibitor) | False (non toxic) | 1 (moderate) | False (poorly bounded) | 5.211 | 99.756 |
| 21 | 1 (no, very low, but possible) | 2 (medium penetrant) | False (non inhibitor) | False (non toxic) | 0 (good) | False (poorly bounded) | 4.573 | 79.811 |
| DHA | 2 (yes, low) | 2 (medium penetrant) | False (non inhibitor) | True (toxic) | 0 (good) | False (poorly bounded) | 2.762 | 56.535 |
| Artemisinin | 2 (yes, low) | 2 (medium penetrant) | False (non inhibitor) | False (non toxic) | 0 (good) | False (poorly bounded) | 3.139 | 53.021 |
| Compound | 19 | 20 | 21 | DHA | Artemisinin |
|---|---|---|---|---|---|
| a EC50, effective concentration 50%; US FDA, United States Food and Drug Administration; LC50, lethal concentration 50%; LD50, lethal dose 50%; LOAEL, lowest observed adverse effect level; TD50, tumorigenic dose 50%. | |||||
| Rat oral LD50 (g kg−1 body weight) | 0.608732 | 0.372949 | 0.262126 | 0.816323 | 0.83021 |
| Rat inhalational LC50 (mg m−3 h−1) | 1.52426 | 0.806181 | 1.96141 | 13.8258 | 6.14271 |
| Carcinogenic potency TD50 (mg kg−1 body weight day−1) | |||||
| Mouse | 5.48795 | 2.10316 | 1.61607 | 1.33707 | 3.16164 |
| Rat | 0.845194 | 0.33488 | 1.21525 | 0.61607 | 0.538544 |
| Rat maximum tolerated dose (g kg−1 body weight) | 0.0576745 | 0.0576745 | 0.0273091 | 0.0319298 | 0.0284095 |
| Developmental toxicity potential | Toxic | Toxic | Non-toxic | Toxic | Toxic |
| US FDArodent carcinogenicity | |||||
| Mouse female | Carcinogen | Carcinogen | Non-carcinogen | Carcinogen | Carcinogen |
| Mouse male | Carcinogen | Carcinogen | Non-carcinogen | Carcinogen | Carcinogen |
| Rat female | Carcinogen | Carcinogen | Non-carcinogen | Carcinogen | Carcinogen |
| Rat male | Carcinogen | Carcinogen | Carcinogen | Carcinogen | Carcinogen |
| Ames mutagenicity | Non-mutagen | Non-mutagen | Non-mutagen | Non-mutagen | Non-mutagen |
| Daphnia EC50 (mg L−1) | 1.19787 | 1.44362 | 0.53483 | 16.4186 | 3.85738 |
| Skin sensitization | Strong | Strong | Strong | Weak | Weak |
| Rat chronic LOAEL (g kg−1 body weight) | 0.0105119 | 0.0081405 | 0.022304 | 0.0166997 | 0.019262 |
| Fathead minnow LC50 (g L−1) | 0.00324 | 0.00324 | 0.001444 | 0.250221 | 0.019018 |
| Aerobic biodegradability | Non-degradable | Non-degradable | Degradable | Degradable | Degradable |
| Ocular irritancy | Mild | Mild | Mild | Severe | Moderate |
| Skin irritancy | Mild | Mild | Mild | Mild | Mild |
| MIC | Minimum inhibitory concentrations |
| DEPT | Distortionless enhancement by polarization transfer |
| ESI-MS | Electrospray ionization mass spectrometry |
| COSY | Correlation spectroscopy |
| HSQC | Heteronuclear single quantum correlation |
| HMBC | Heteronuclear multiple-bond correlation spectroscopy |
| MIC | Minimum inhibitory concentration |
| This journal is © The Royal Society of Chemistry 2015 |