Seema
Singh
a,
Anirban
Chakraborty
a,
Vandana
Singh
a,
Aniruddha
Molla
a,
Sahid
Hussain
a,
Manoj K.
Singh
*b and
Prolay
Das
*a
aDepartment of Chemistry, Indian Institute of Technology, Patna, Patna-800013, Bihar, India. E-mail: prolay@iitp.ac.in; Fax: +91 612 225 7383; Tel: +91 612 255 2057
bAtomic and Molecular Physics Division, Bhabha Atomic Research Centre, Mumbai-400085, India. E-mail: mksingh@barc.gov.in; Fax: +91-22-2550 5151; Tel: +91-22-2559 3987
First published on 23rd January 2015
Photodynamic therapy (PDT) involves generation of reactive oxygen species (ROS) by the irradiation of a photosensitizer. Controlled and targeted release of ROS by a photosensitizer is crucial in PDT. For achieving controlled generation of ROS, a ZnSe/ZnS quantum dot (QD) donor and protoporphyrin IX (Pp IX) acceptor based fluorescence resonance energy transfer (FRET) probe is reported here. The QDs and Pp IX are assembled either by direct conjugation or through DNA hybridization. Complementary DNA strands are individually conjugated to the QDs and Pp IX by amide coupling. Due to the overlap of the emission spectrum of QDs and the absorption spectrum of Pp IX, efficient transfer of energy from QDs to Pp IX was observed in both the cases. The FRET efficiency was quantitatively evaluated by steady-state and time-resolved spectroscopy and compared between the QD–Pp IX direct conjugate and QD–DNA–Pp IX assembly at various donor to acceptor ratios. Since a single QD can harbor a multiple number of Pp IX–DNA counterparts through DNA hybridization, the FRET efficiency was found to increase with the increase in the number of Pp IX acceptors. ROS generation from Pp IX was studied for the FRET pairs and was found to be affected by the irradiation time of the QD donor.
The use of QDs in PDT can be very advantageous since apart from being photobleaching resistant detection probes, they enable the use of a wavelength at which the photosensitizer does not absorb, thus offering flexibility to utilize variable excitation wavelengths to activate the photosensitizer molecule.17 CdSe QDs when excited have been shown to excite a phthalocyanine photosensitizer (Pc4) by FRET to generate ROS.18 Generation of singlet oxygen upon excitation at 488 nm via thiol-capped CdTe QD-sulfonated aluminum phthalocyanine composites has also been reported.19
One potential shortcoming of Cd based QDs for biological application is the toxicity issue20 and PDT is no exception. In PDT, the toxicity of the donor and the photosensitizer in the absence of light is strictly unwarranted. DNA strand breakage and damage have also been observed in plasmids photosensitized by CdSe–ZnS QDs, which may limit their uses in PDT.21 Previous studies have shown that engineered nanoparticles like carbon nanotubes (CNT), silver nanoparticles, CdSe QDs and TiO2 nanoparticles can also cause lung damage by inflammatory effects when used as carriers of PS in PDT.22,23
Apart from the criterion that needs to be fulfilled for an ideal donor in PDT applications including photostability and toxicity issues, it is important that the PDT system be well targeted for in vivo applications. Targeting of therapeutic drugs is often done by attaching a biological entity to the drug molecule, which can recognize its counterpart and accumulate in the region of interest.24 This minimizes side effects, favorably modifies the dose rate and increases drug efficacy.25,26 It is well known that cancer cells are deficient in antioxidative defense systems and hence are highly vulnerable to ROS.27,28 In PDT, the main concept is ROS generation and subsequent cancer cell destruction through it. However, excess ROS generation can have several side effects, whereby healthy cells can be affected. Thus, controlled and targeted release of ROS by PS is the essential need of PDT. Targeting of PDT systems with antibodies and homing peptides has been reported.29–31 It remains to be seen whether the attachment of targeting biological entities to the donor/photosensitizer compromises the efficiency of the PDT system or leads to controlled and sustained ROS generation.
Herein, we report the generation of ROS from Pp IX, where the excitation of the same is achieved by FRET from the ZnSe/ZnS QDs (Scheme 1). Furthermore, a comparative study of the efficiency of ROS generation for various systems consisting of the QDs and Pp IX is presented. The ROS generation from the free QDs and Pp IX system (individually or in mixtures) in solution is compared with those from the QD–Pp IX covalent conjugate (QD covalently attached to Pp IX), QD–DNA, and Pp IX–DNA individually or self-assembled by DNA hybridization. Single stranded DNA (ssDNA) was attached to QDs by amide coupling. Similar chemistry was also used for covalent attachment of Pp IX to ssDNA, which is complementary to the DNA sequence used to link with the QDs. Controlled and proportional release of ROS in the case of QD–DNA–Pp IX assembly was observed.
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Scheme 1 Scheme for conjugation of DNA with QD and Pp IX and subsequent generation of ROS from Pp IX by FRET from QD conjugated through DNA assembly. |
The self-recognition property of DNA has been used to assemble the QD–DNA and Pp IX–DNA conjugates. Our study shows that DNA can be used as a self-assembling molecule, whereby FRET efficiency can be modulated by the careful choice of the sequence length. Moreover, a deliberate choice of the sequence of DNA can provide the targeting handle, as in the case of protein recognition by DNA aptamer sequences.32
For the coupling of Pp IX with DNA, Pp IX (25 μL, 5 nM) in DMF was added to a premixed solution of EDC (10 μL, 25 μM) and NHS (20 μL, 50 μM) and the reaction mixture was adjusted to pH 8 by sodium bicarbonate buffer with gentle stirring for 1 h. Amine terminated ssDNA (S2) (10 μL, 5 nM) was added to the reaction mixture and stirred overnight at 55 °C. Excess of EDC and NHS was removed by dialysis (MWCO-5 kDa). The desired product Pp IX–DNA i.e. Pp IX–S2, Pp IX linked to a single DNA strand (S2), was purified by polyacrylamide gel electrophoresis (PAGE). The purified Pp IX–DNA was subjected to molecular weight determination by Autoflex II MALDI-TOF-MS (Bruker Daltonics, Billerica, MA) using linear negative mode. Data processing was performed by the Flex Analysis software.
The QD–DNA conjugate was added to the Pp IX–DNA conjugate in sodium phosphate buffer (10 μL, 10 nM) at pH 7.5. The solution was annealed by heating at 90 °C for 10 min and slowly cooled down to room temperature. The hybridization was done separately using QD–DNA conjugates with various ratios of Pp IX–DNA conjugates from 1:
1 to 1
:
4 with an increment of 1 nM of the latter.
UV-visible spectra were recorded on an UV-2550 spectrophotometer (Shimadzu). Steady-state fluorescence spectra were collected on a Fluoromax-4 spectrofluorometer (Horiba, Japan). For excited state lifetime measurement FluoTime 200 from PicoQuant, Germany, working on a time correlated single photon counting (TCSPC) technique has been used. All measurements were done using water as a solvent.
For ROS measurement 5 nM dihydrorhodamine 123 solutions (20 μL) were added to a fixed volume of sample solutions and irradiated with a UV lamp (λmax = 302 nm). Generation of fluorescent rhodamine 123 due to oxidation by ROS is monitored at different time intervals by UV-visible and steady-state fluorescence spectroscopy.
For the determination of quantum yield, a solution of quinine sulphate (QY = 0.55) in 0.5 M H2SO4 was used as standard. The solutions of QDs in water and quinine sulphate in H2SO4 were prepared to have similar absorbance at the excitation wavelength. Quantum yields were calculated using eqn (1).
QYx = QYs × (As/Ax) × (Ix/Is) × (nx2/ns2) | (1) |
The optical characteristics of QDs were investigated by UV-visible and fluorescence spectroscopy. It can be seen that the QDs have broad absorption in the UV region and the first absorption peak appears at 343 nm (Fig. 1A). The effective mass model equation (eqn (2)) was used to calculate the size of QDs.
![]() | (2) |
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Fig. 1 (A) UV-visible absorption and (B) fluorescence spectra of ZnSe core and ZnSe–ZnS core–shell QDs. |
The fluorescence spectra of ZnSe core and ZnSe–ZnS core–shell QDs are shown in Fig. 1B. The emission spectrum shows two components: a relatively narrow peak at 373 nm which is due to the band edge emission and the broad one at 450 nm resulting from trap state emission.36 These two components have significance in FRET as the band edge emission (λmax = 373 nm) overlaps with the Soret band of Pp IX and the trap state emission (λmax = 450 nm) overlaps with the Q bands of Pp IX.37 The Forster distance for this FRET probe i.e. the QD donor and the Pp IX acceptor was estimated to be 4.85 nm. Evidently, the QDs fulfill the criteria of a good donor for FRET to occur with Pp IX as an acceptor. Due to the higher fluorescence quantum yield, ZnSe–ZnS core–shell QDs (QY = 0.32) were preferred over ZnSe core QDs (QY = 0.19) for further investigation.
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Fig. 2 1% agarose gel electrophoresis showing mobility of Pp IX, ZnSe/ZnS QD and QD–Pp IX = 1![]() ![]() |
Following the EDC–NHS mediated amide formation chemistry, two separate yet complementary 12-base long ssDNA (S1 and S2, Table 1) are covalently conjugated to QDs and Pp IX. The activated ester formed from the –COOH groups of the ligands in the QDs and the Pp IX is coupled with the 5′-amine terminated ssDNA S1 and S2, respectively, following the standard procedure.
S1 | NH2-5′-TCA GTC AAC AGC-3′ |
S2 | NH2-5′-GCT GTT GAC TGA-3′ |
Due to the presence of multiple –COOH functional groups on the surface of the QDs, more than one ssDNA can be attached to the QDs. This is indeed found to occur since the gel mobility of the QDs is appreciably slowed down when conjugated with the DNA as compared to that with ssDNA (12 mer) and only QDs were used as controls (Fig. 3A). DLS studies also revealed an increase in the average hydrodynamic radii from ∼12 nm to ∼21 nm after conjugation with DNA (ESI,† Fig. S1). This is advantageous, since multiple attachments allow easy purification of QD–DNA from the unreacted DNA by dialysis using a suitable molecular weight cut off membrane. More importantly, a single QD with multiple DNA strands can self-assemble multiple Pp IX–DNA conjugates, which can significantly increase the FRET efficiency and hence ROS generation. This is one of the reasons for QD mediated FRET to be worth exploring for photosensitization in PDT applications.
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Fig. 3 (A) Agarose gel image showing formation of the QD–DNA conjugate. (B) PAGE analysis of the Pp IX–DNA conjugate. |
Pp IX has two –COOH groups and thus has the possibility of conjugating itself with one or two ssDNA. For the conjugation of Pp IX to DNA, use of excess EDC and NHS leads to the activation of both the –COOH groups in Pp IX, leading to the formation of the Pp IX conjugate with single or two DNA strands. We used denaturing PAGE to visualize as well as to purify and isolate the Pp IX–DNA conjugate that contains only one DNA strand from the crude reaction mixture (Fig. 3B and S2, ESI†). Attachment of Pp IX to the DNA modifies the gel mobility of the DNA strands, but two distinct bands were obtained corresponding to the number of DNA strands that were attached to the Pp IX molecule. The mobility of the Pp IX conjugated to one ssDNA band is less than the corresponding free 12 mer ssDNA but higher than the 24 mer ssDNA used as a control, which confirmed the formation of the Pp IX–DNA conjugate. The MALDI-TOF spectrum of purified Pp IX–DNA (ESI,† Fig. S3) shows the base peak at 4546.09 corresponding to the mass of Pp IX–DNA. The UV-visible, steady-state fluorescence and time resolved spectra of QDs and Pp IX before and after conjugation with ssDNA show insignificant differences in optical absorption and emission of the QDs and Pp IX (ESI,† Fig. S4 and S5).
The QD–DNA conjugate was hybridized with the Pp IX–DNA conjugate through annealing. Since, multiple attachments of DNA strands with the QDs were evident, we used four different concentrations of the Pp IX–DNA conjugate (1:
1 to 1
:
4) for the DNA hybridization. As the concentration of the Pp IX–DNA conjugate increases, chances of multiple assembly of Pp IX on a single QD also increase. From the gel image (Fig. 4 and Fig. S6, ESI†) it can be seen that there is retardation in the mobility of the band corresponding to the assembly as compared to dsDNA (12bp) and QDs used as controls. With the increase in the reactant ratio of QD–DNA to Pp IX–DNA from 1
:
1 to 1
:
4, the retardation in gel mobility is more apparent. Moreover, the absence of any DNA other than the QD–DNA–Pp IX bands indicates that the hybridization is complete in the solution for both the samples.
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Fig. 4 Agarose gel electrophoresis of the QD–DNA–Pp IX assembly. S1 and S2 were prestained with Sybr Green (lane 1). |
FRET efficiency from steady state fluorescence and excited state lifetime measurement of QDs | ||
---|---|---|
Ratio of product | FRET efficiency from steady state (%) | FRET efficiency from excited state lifetime (%) |
QD![]() ![]() |
||
1![]() ![]() |
31 | 25 |
1![]() ![]() |
47 | 31 |
1![]() ![]() |
58 | 43 |
1![]() ![]() |
65 | 60 |
QD–DNA![]() ![]() |
||
1![]() ![]() |
25 | 20 |
1![]() ![]() |
32 | 30 |
1![]() ![]() |
43 | 44 |
1![]() ![]() |
55 | 57 |
The FRET efficiency was calculated using eqn (3) and (4) for steady-state fluorescence measurement and excited-state lifetime decay of donor QDs, respectively:
E = 1 − Fda/Fd | (3) |
E = 1 − τda/τd | (4) |
FRET analysis was done with two systems, the QD–Pp IX direct covalent conjugate and QD–DNA–Pp IX assembled by DNA hybridization (with an increasing ratio of the Pp IX component). We studied the effect of the increasing ratio of the acceptor (Pp IX) at a constant concentration of the donor in each of the systems. This ensures multiple attachment of the acceptor to a single QD. With an increasing ratio of the acceptor Pp IX a periodic decrease in the fluorescence intensity of the QDs was observed (Fig. 5B). The FRET efficiency was found to increase from ca. 31% to 65% with the increase in the QD:
Pp IX ratio from 1
:
0.88 to 1
:
2.88. However, no FRET was observed when solutions of QDs and Pp IX in the free state were mixed in the same ratio.
In the QD–DNA–Pp IX assembly there is an increase in the distance between QDs and the photosensitizer Pp IX linked via 12 base pair DNA. Here also a periodic decrease in the fluorescence intensity of the QDs with the increasing concentration of Pp IX–DNA was observed by steady state measurement (Fig. 6B). The FRET efficiency was found to increase from ca. 25% to 55% with an increase in the number of Pp IX–DNA conjugates that are assembled to QD–DNA by hybridization. FRET depends on the distance between donor and acceptor molecules and their orientation. It is obvious that when QDs and Pp IX are assembled through DNA, the FRET efficiency decreases as evident from the data obtained in the current study (Table 2).
The FRET efficiency was also calculated using time resolved spectroscopy. The sample was excited using a 340 nm, 400 ps pulsed light emitting diode and the fluorescence decay profile of QDs was measured at an emission wavelength of 373 nm. The fluorescence lifetime analysis software FluoFit professional of Picoquant is used to analyse the results. The excited state lifetime of QDs was found to decrease upon increasing the concentration of the Pp IX as shown in Fig. 7 which indicates a transfer of energy from the donor to the acceptor.39 We observed a decrease in the average lifetime of QDs from 55 ns to 22 ns upon direct covalent conjugation with Pp IX (QD:
Pp IX = 1
:
2.88) and 24 ns for QD–DNA–Pp IX (QD–DNA
:
Pp IX–DNA = 1
:
2.96) assembly. The FRET efficiency calculated from the time-resolved data has nearly the same value as calculated from the fluorescence intensity decay measurement (Table 2).
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Fig. 7 Time-resolved fluorescence decay of (A) QD–Pp IX conjugate and (B) QD–DNA–Pp IX assembly recorded for solutions with varying ratios of donor and acceptor. Irf: instrument response function. |
The ROS generation was studied for the free QDs, free Pp IX, QD–S1, QD–S1–S2 (QD conjugated to S1 and S1 annealed to S2), Pp IX–S2, PpIX–S2–S1, a mixture of QDs and Pp IX in the free state without any conjugation, a mixture of QD–S1 and Pp IX–S2 in the free state without hybridization, QD–Pp IX direct conjugate and QD–S1–S2–Pp IX assembly (Fig. 8 and Fig. S8–S12, ESI†). For ROS generation study of the FRET probes, samples in different ratios have been used. All the samples were analysed before and after irradiation of samples upon addition of DHR 123. The presence of an absorbance peak at 500 nm and an emission peak at ∼530 nm at an excitation wavelength of 485 nm confirms the formation of rhodamine 123 from DHR 123 due to ROS generation (ESI,† Fig. S8–S12). The fluorescence from rhodamine 123 (λmax ∼ 530 nm) at different time intervals was measured spectrophotometrically. It can be seen from the absorbance (500 nm) and fluorescence (∼530 nm) peaks of rhodamine 123 (Fig. 8 and Fig. S8–S12, ESI†) that the samples containing FRET probes show higher ROS generation as compared to the free QD, QD–S1, QD–S1–S2, free Pp IX, Pp IX–S2, Pp IX–S2–S1, a mixture of QDs and Pp IX in the free state without any conjugation, a mixture of QD–S1 and Pp IX–S2 in the free state without hybridization. The photosensitizer Pp IX in the free state does not get sufficient energy for excitation and hence leads to less ROS generation. The same is true for the PpIX–S2 conjugate in single or when duplexed with the S1 strand. As expected, ROS generation from the QD–Pp IX direct conjugate is the highest among all the samples followed by that from the QD–DNA–Pp IX assembly. This is due to more efficient FRET in the former that leads to the formation of increased amounts of ROS as compared to the QD–DNA–Pp IX assembly, where the acceptor and the donor are separated in space by a 12 mer duplex DNA. Nevertheless, the QD–Pp IX direct conjugate lacks the biorecognition and possible targeting entity which is present as DNA in the current study. This DNA strand is open to modification and can be wisely chosen to target various cell surface markers that will increase the efficiency of the treatment modality as in PDT.
Footnote |
† Electronic supplementary information (ESI) available: Dynamic light scattering of ZnSe–ZnS QD and QD–DNA conjugates, gel images, MALDI-TOF spectra of Pp IX–DNA conjugates, UV-visible and fluorescence spectra of QDs and Pp IX before and after conjugation with DNA, the overlap spectra of QDs (donor) and Pp IX (acceptor) and comparative UV-visible and fluorescence spectra for ROS generation in various systems of QDs and Pp IX. See DOI: 10.1039/c4cp05306k |
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