Agnieszka
Adamczyk-Woźniak
*,
Krzysztof M.
Borys
,
Izabela D.
Madura
,
Alicja
Pawełko
,
Ewelina
Tomecka
and
Kamil
Żukowski
Faculty of Chemistry, Warsaw University of Technology, Noakowskiego 3, 00-664 Warsaw, Poland. E-mail: agnieszka@ch.pw.edu.pl; Fax: +48 226282741; Tel: +48 222346147
First published on 1st October 2012
The pKas as well as apparent binding constants of several 3-amino-substituted benzoxaboroles with alizarin red S (ARS) and some biologically important sugars have been evaluated and compared with that of the parent aminomethylphenylboronic acids. The investigated benzoxaboroles reveal lower acidity than the corresponding boronic acids. All the studied boronic compounds display the usual order of apparent binding constant values with glucose, galactose and fructose. The X-ray structure of the model catechol ester of the morpholinylmethylphenylboronic acid has been determined. The molecules are monomeric zwitterions with a tetracoordinated boron atom. The intermolecular interactions have been described with the aid of the Hirshfeld surface analysis.
The first 3-amino-substituted benzoxaborole was reported several years ago23 and some of its physicochemical properties have been recently studied.24 Experimental studies enabled the synthesis of several 3-amino-substituted benzoxaboroles,25 which combine structural motifs of benzoxaboroles and ortho-aminomethylphenylboronic acids (Wulff-type receptors) within one molecule. Such a structure was expected to result in exceptional properties, which is the subject of the present work.
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| Fig. 1 Unsubstituted benzoxaborole (1), 3-amino-substituted benzoxaboroles (2) and their aminomethylphenylboronic analogues (3). | ||
Since the Lewis acidity of boronic acid receptors seems to play a crucial role in diol binding, as well as other biological actions,28,29 pKas of the investigated benzoxaboroles (1 and 2a–c) and their boronic acid analogues (3a–c) have been determined by a UV-Vis spectroscopy, according to the slightly modified method of Tomsho et al.30 The value obtained for 1 was consistent with the literature data.30 The measurements have been repeated three times with sufficient reproducibility of the results (see ESI†).
Benzoxaboroles usually display lower pKa (higher Lewis acidity) than the corresponding boronic acids. Owing to that, benzoxaboroles are prone to the tetragonal form in physiological solutions, which is crucial in the sensing of biomolecules. The pKas of various phenyl ring substituted benzoxaboroles were shown to follow the Hammett equation.30 Only one example of the compound with the substituted heterocyclic oxaborole ring has been reported so far (1a), displaying reasonably higher pKa than 1 (Fig. 2). Quite surprisingly, the pKas determined for the 3-amino-substituted benzoxaboroles (2a–c) are equal within the experimental error and almost the same as that for 1. Since the parent amines differ considerably in basicity, no difference in pKas of 2a–c means that the amino substituent is not involved in the acid–base equilibrium.
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| Fig. 2 The acid–base equilibrium and pKa values of benzoxaboroles. | ||
A different phenomenon can be observed in the case of the ortho-aminomethylphenylboronic acids (3), where amino groups interact with the boronic acid unit (Scheme 1), resulting in lowering the pKa of the boronic acid moiety. Due to the vicinity of the amino and boronic acid groups in 3 and sufficient flexibility of the amino group, formation of a N–B bond is possible, which considerably lowers the observed pKa29 as it was first described by S. L. Wiskur et al.31 At the same time, a single pKa value is observed instead of two as in the case of compounds with a distant boronic acid and an amino group like 3-pyridinium boronic acids investigated by S. Iwatsuki et al.32
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| Scheme 1 The acid–base equilibrium in ortho-aminomethylphenylboronic acids (3). | ||
Despite a broad application of ortho-aminomethyl-substituted phenylboronic acids, only several pKa values of those compounds have been reported.28,29,31 Interestingly, in the case of the derivatives of aromatic amines (e.g.3f, Fig. 3), the pKas are considerably higher,29,33,34 due to the lower basicity of the aromatic amines.
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| Fig. 3 Reported pKa values of ortho-aminomethylphenylboronic acids. | ||
The determined dissociation constants of 3a–c range from 4.8 to 6.3 (Fig. 4) and follow the pKas of the parent cyclic amines (8.39 for morpholine, 9.13 for thiomorpholine and 11.12 for piperidine), which confirms the expected N–B interaction and places those compounds amongst boronic acids of the lowest pKa.28
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| Fig. 4 pKa values of 3a–3c. | ||
Development of the competition binding assay with ARS by Springsteen and Wang35,36 enabled investigation of the sugar binding ability of non-fluorescent boronic acids with biologically important molecules, broadening the diagnostic potential of phenylboronic acid compounds. The boronic acid:ARS esters are also the basis of numerous indicator displacement assays, applied in sensing of various analytes.37–41
Since formation of the boronic acid–sugar complex in such systems takes place via transesterification, the values of the apparent binding constants of boronic acids with ARS may reasonably influence the evaluated apparent binding constants with sugars. Moreover, the determined values can give an idea of the trend in the binding of other aromatic 1,2-diols such as dopamine, noradrenaline or adrenaline (Fig. 5).
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| Fig. 5 Aromatic diols: alizarin red S, catecholamines and catechol (4). | ||
The values of the apparent binding constants of 1, 2a–c and 3a–c with ARS range from 659 for 1 to 3209 for 3c. No general tendency can be noticed within the determined values, yet both of the investigated piperidine derivatives 2c and 3c display relatively high binding constants (Fig. 6 and Table 1). 3-Thiomorpholinylbenzoxaborole (3b) displays surprisingly low KARS value, comparable with that determined for the unsubstituted benzoxaborole (1). Interestingly, its phenylboronic acid analogue (2b) displays relatively high KARS.
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| Fig. 6 The apparent binding constants of 1, 2a–c and 3a–c with ARS, values for 3a and 3b have been reported previously.46 | ||
In order to get insight into the actual structure of the boronic acid:ARS complex, the model catechol ester was obtained by the esterification of 3a with 4. The reaction was carried out for 1 h at room temperature in a chloroform–methanol mixture (5
:
1, v/v) over Na2SO4 as a dehydrating agent (Scheme 2). The 1H NMR analysis of the resulting post-reaction mixture showed neither traces of the parent substances nor signal of the methoxy group. The monocrystal of compound 5a was obtained by slow evaporation of the solvents after removal of the drying agent.
Crystal structure of the obtained complex was determined by the X-ray diffraction technique. Similarly to Anslyn et al.42 findings, instead of a phenylboronic catechol ester with a three-coordinated boron center (5), a methoxylated boronate (5a) was detected in the crystalline state. Thus, the molecule of 5a can be described as a zwitterion with protonated amine and a deprotonated methanol molecule which binds to boron, and hence changing its coordination to sp3 (Fig. 7). Further, on the basis of some previous reports,42,43 the presence of such structure in the equilibrium solution containing methanol as a co-solvent should not be unexpected. The tetracoordinated boron center species should be less prone to transesterification with diols. As the competition assay relies upon transesterification of the boronic acid:ARS ester with sugars, the apparent binding constants of aminomethylphenylboronic acids with sugars can be reasonably underestimated if complexes similar to 5a are present in solution. The zwitterionic nature of the complexes may also have contributed to the low solubility of the complex in MeOH.43
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| Scheme 2 Synthesis of 5a. | ||
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| Fig. 7 An Ortep-344 diagram of 5a showing the atoms’ thermal ellipsoids at 50% probability level together with their numbering scheme. The intramolecular N–H⋯O hydrogen bond is depicted with dotted lines while the O–H⋯O bond with the solvent molecule with dashed ones. | ||
The molecules of 5a crystallize in a monoclinic system in P21/n space group symmetry with an additional methanol molecule. The solvent molecule is linked to the 5a molecule via a medium strong O–H⋯O hydrogen bond45 to one of the boronic acid oxygen atoms (Fig. 7). The morpholine ring shows the chair conformation with nitrogen and oxygen atoms lying on opposite sides of the ring. The similar conformation of the morpholine ring was observed in acid (3a)46 and benzoxaborole (2a)23 analogues. Moreover, the morpholine nitrogen atom serves as a donor to the methoxy oxygen atom, O4, forming the intramolecular hydrogen bond described with the graph S(7).47 The H-bond distances H⋯O, N⋯O are 1.75(2) and 2.625(1) Å, respectively, while the N–H⋯O angle equals 157(2)°, and these values are alike those observed for similar methoxylated boronic esters.42,43 It is worth noting that 5a is another example where the methoxy oxygen is a better hydrogen bond acceptor than the ring's oxygen atoms, which may be attributed to its higher Lewis basicity.
As all the strong hydrogen bond donors present in both the molecule in question and the solvent are engaged in either the intramolecular hydrogen bond or the H-bond denoted D according to Etter's notation,47 the only interactions that can lead to 3-D structure are the weak ones. The Hirshfeld surface analysis48 in the form of the decomposed fingerprint plots49 elucidated the presence of C–H⋯O as well as C–H⋯π intermolecular interactions only (Fig. 8). The C–H⋯O hydrogen bonds appear on the chart as long whiskers ending at the de + di ≈ 2.4 Å indicating the pronounced C–H⋯O bonds.50 The interactions with π-electrons show up as characteristic “wings”.49 The relatively short H⋯π contacts51 of 2.55 Å were found between the C(sp3)–H donor coming from morpholine, and the phenyl ring of the molecules related by 21 screw axes. All C–H⋯O hydrogen bonds found as well as the shortest C–H⋯π interaction join the 5a molecules into a layer on the (101) crystallographic plane. The substantially weaker C–H⋯π contacts combine the adjacent layers into 3-D structure (Fig. 3, ESI†).
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| Fig. 8 The 2-D representation of the Hirshfeld surface of the 5a molecule with H-bonded methanol. The decomposed fingerprint plots show the O⋯H/H⋯O (left) and C⋯H/H⋯C (right) contacts only with characteristic features for the prominent weak intermolecular interactions. The full fingerprint appears beneath each decomposed plot as a grey shadow. | ||
The apparent binding constants of 1, the 3-amino-substituted benzoxaboroles (2a–c) and piperidinylmethylphenylboronic acid (3c) with glucose, galactose and fructose have been quantitatively evaluated using the Springsteen and Wang method.36 The determined K values have been compared with the previously reported binding constants of 3a and 3b.45 As differences in solution composition may strongly influence the binding constant values, all the measurements have been carried out under the same conditions (methanol–0.1 M aqueous phosphate buffer pH = 7.4 (1
:
1, v/v) + 1 vol% DMSO), close to the physiological ones. All the determined apparent binding constants together with KARS are given in Table 1.
The introduction of the amino substituent into the heterocyclic benzoxaborole ring influences sugar binding reasonably, resulting generally in the increase in the observed K. Binding of 2b with galactose is an exception, with a small drop in the apparent KGal value in comparison with that for 1. All the considered boronic acid molecules bind fructose preferably (the highest K values), which is a common case for most of the mono-phenylboronic acids. The KFru values are reasonably higher for the 3-amino-substituted benzoxaboroles (2a–c) in comparison with those of their boronic acid analogues (3a–c). No such general conclusion can be drawn for KGal or KGlu. Interestingly, both piperidine derivatives 2c and 3c display reasonably high KGlu of 33 and 32 respectively.
:
1, v/v) + 1 vol% DMSO. Fluorescence spectra were collected for a solution with constant concentration of ARS (10−4 M) and proper boronic receptor. All the spectra have been smoothed using Savitzky–Golay function.53 The maximum fluorescence intensity was then read from the spectra. The association constant of the ARS–boronic acid (KARS) was calculated using the modified Benesi–Hildebrand equation.36 Then a 1.0 × 10−4 M solution of ARS with an appropriate boronic acid concentration was prepared, keeping ca. 20% of ARS in its free form. The solution was transferred into a quartz cuvette where fluorometric titration was performed.
Crystal data: C19H26BNO5, M = 359.22, monoclinic, a = 13.1083(3) Å, b = 9.45522(19) Å, c = 15.1358(4) Å, β = 99.016(2)°, V = 1852.80(7) Å3, T = 100.15 K, space group P21/n (no. 14), Z = 4, μ(Cu Kα) = 0.747, 23
639 reflections measured, 3316 unique (Rint = 0.0390) which were used in all calculations. The final wR2 was 0.0894 (all data) and R1 was 0.0335 (I > 2σ(I)).
Footnote |
| † Electronic supplementary information (ESI) available: pKa values determined in three independent experiments, UV/vis spectral scans for compounds 1, 3c and phenylboronic acid in solutions at various pH values; normalized spectral scans, spectral difference between different solutions of compounds, pKa determination plots, the apparent binding constant values (K [M−1]) of 1, 2a–c and 3a–c with ARS, fructose, galactose and glucose; fluorescence spectrum of ARS at different concentrations of boronic acid; 1/ΔIF versus 1/Cboronic acid plot; selected geometrical parameters and packing diagram for 5a. Geometry of intra- and intermolecular interactions in 5a. CCDC 893518 (5a). For ESI and crystallographic data in CIF or other electronic format see DOI: 10.1039/c2nj40687j |
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