The binding properties of the two ligands (L) N,N′-bis[(3-hydroxy-4-pyron-2-yl)methyl]-N,N′-dimethylethylendiamine (Malten) and 4,10-bis[(3-hydroxy-4-pyron-2-yl)methyl]-1,7-dimethyl-1,4,7,10-tetraazacyclododecane (Maltonis) towards M(II) transition metal ions (M(II) = Cu(II) for Malten and Co(II) for Maltonis, respectively), were investigated in aqueous solution. Each compound contains two 3-hydroxy-2-methyl-4-pyrone units (Maltol) symmetrically spaced by a different polyamine fragment. The formation of only mononuclear complexes was detected and the main species present in a wide range of pH is the neutral [M(II)(H₋₂L)] complex. This is able to stabilize one hard M(III) metal ion such as Gd(III) and Y(III), giving rise to the formation of new hetero-trinuclear complexes of M(II)–M(III)–M(II) sequence. The trinuclear species having the formula {M(III)[M(II)(H₋₂L)]₂}³⁺ (M(II) = Cu(II) and M(III) = Y(III) or Gd(III) for Malten and M(II) = Co(II) and M(III) = Gd(III) for Maltonis) are also formed in a wide range of pH, including pH = 7 and can be isolated in high yield as a perchlorate salt. The crystal structures of all the studied hetero-trinuclear species highlight that such systems are formed thanks to the synergy between the different stereochemical requirement of the transition metal (Cu(II) or Co(II)) and the different donor atoms set of the ligands which preorganize the maltol units for the binding of the hard M(III) metal, otherwise difficult to bind in water, through L/M(II)/M(III) self-assembling. The magnetic properties of the hetero-trinuclear spin systems were investigated; in the M(II)–Gd(III)–M(II) species, Gd(III) interacts with the two 3d ions of this class of compounds by similar coupling mechanism.