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Cucurbit[7]uril selectively binds the epigenetic mark Nε,Nε,Nε-trimethyllysine (LysMe3, KCB[7] = (1.8 ± 0.6)× 106 dm3 mol−1) by 3500-fold over lysine ((5.3 ± 0.7) × 102 dm3 mol−1) in aqueous solution, using ion–dipole interactions and the hydrophobic effect, rather than cation–π interactions, as in the “aromatic cages” of p-SO3-calix[4]arene hosts or chromodomain proteins which recognize LysMe3. The trend in KCB[7] of LysMe3 > LysMe2 > LysMe > Lys follows the recognition pattern of the chromodomain HP1 and other LysMen protein readers. With CB[6], protonation of the guest carboxylate group is required for the formation of inclusion complexes with the LysMen series. The CB[7] host also displays modest selectivity between the asymmetric ((2.0 ± 0.3) × 103 dm3 mol−1) and symmetric ((6.1 ± 0.6) × 103 dm3 mol−1) dimethylarginines, both of which bind more strongly than the parent arginine or monomethylarginine.
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Organic & Biomolecular Chemistry
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